README.rst

MAPR

An OMERO.web app allowing to browse the data through attributes linked to the image

Requirements

• OMERO 5.3 or newer.

Installing from Pypi

This section assumes that an OMERO.web is already installed.

Install the app using pip:

$ pip install omero-mapr

plug in the app to OMERO.web

$ bin/omero config append omero.web.apps '"omero_mapr"'

$ bin/omero config append omero.web.ui.top_links '["Key1", {"viewname": "maprindex_key1", "query_string": {"experimenter": -1}}, {"title": "Key1 browser"}]'

$ bin/omero config append omero.web.mapr.config '{"menu": "key1", "config": {"default": ["Key1"], "all": ["Key1", "Key2"], "ns": ["openmicroscopy.org/mapr/key1"], "label": "Key1"}}'

Now restart OMERO.web as normal.

Testing

Testing MAPR requires OMERO.server running. Run tests (includes self-contained OMERO.server, requires docker):

docker-compose -f docker/docker-compose.yml up --build --abort-on-container-exit
docker-compose -f docker/docker-compose.yml rm -fv

License

MAPR is released under the AGPL.

Copyright

2016, The Open Microscopy Environment