Add generated files and small config changes (#35)

Author: eliotwrobson

.github/workflows/benchmark.yml

@@ -32,4 +32,4 @@ jobs:
         run: poetry install --with dev,benchmark
 
       - name: Benchmark with pytest-benchmark
-        run: poetry run pytest --benchmark-only benchmarks/test_benchmark.py
+        run: poetry run pytest --benchmark-only --benchmark-warmup-iterations=0 benchmarks/test_benchmark.py

.gitignore

@@ -112,8 +112,6 @@ venv
 
 # Cython
 *.html
-*.cpp
-*.c
 
 speed/
 

build_package.py

@@ -8,6 +8,8 @@
 from setuptools.command.build_ext import build_ext
 from setuptools.dist import Distribution
 
+MACROS = [("NPY_NO_DEPRECATED_API", "NPY_1_7_API_VERSION")]
+
 
 def build_cython_extensions() -> None:
     # Flag to enable Cython code generation during install / build. This is
@@ -27,6 +29,7 @@ def build_cython_extensions() -> None:
             # Not so nice. We need the random/lib library from numpy
             library_dirs=[os.path.join(np.get_include(), "..", "..", "random", "lib")],
             libraries=["npyrandom"],
+            define_macros=MACROS,  # type: ignore
         ),
     ]
 

pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "cynetdiff"
-version = "0.1.16"
+version = "0.1.17"
 description = "A fast network diffusion library"
 authors = ["Eliot W. Robson <[email protected]>"]
 license = "MIT"
@@ -90,8 +90,6 @@ ignore_missing_imports = true
 
 [tool.pytest.ini_options]
 testpaths = "tests"
-# Don't need warmup iterations because benchmark is already an average.
-benchmark_warmups = 0
 
 [tool.ruff]
 line-length = 120