Github Action: Updated dictionary term files and term pages

github-actions[bot] · github-actions[bot] · commit 08b9cfca8aa2 · 2025-02-27T18:12:35.000Z
diff --git a/docs/template/assay_RNAseq_template.md b/docs/template/assay_RNAseq_template.md
@@ -9,7 +9,7 @@ title: assay RNAseq template
 {: .note-title } 
 >assay RNAseq template
 >
->Template for RNAseq [[Source]](Sage Bionetworks)
+>Template for RNAseq [[Download]](https://github.com/eliteportal/data-models/raw/refs/heads/main/elite-data/manifest-templates/EL_template_AssayRNAseqTemplate.xlsx)
 <table id="myTable" class="display" style="width:100%">
     <thead>
     {% for column in mydata[0] %}
diff --git a/docs/template/assay_bsSeq_template.md b/docs/template/assay_bsSeq_template.md
@@ -9,7 +9,7 @@ title: assay bsSeq template
 {: .note-title } 
 >assay bsSeq template
 >
->Template for bsSeq [[Source]](Sage Bionetworks)
+>Template for bsSeq [[Download]](https://github.com/eliteportal/data-models/raw/refs/heads/main/elite-data/manifest-templates/EL_template_AssayBsSeqTemplate.xlsx)
 <table id="myTable" class="display" style="width:100%">
     <thead>
     {% for column in mydata[0] %}
diff --git a/docs/template/assay_metabolomics_template.md b/docs/template/assay_metabolomics_template.md
@@ -9,7 +9,7 @@ title: assay metabolomics template
 {: .note-title } 
 >assay metabolomics template
 >
->Template for Metabolomics [[Source]](Sage Bionetworks)
+>Template for Metabolomics [[Download]](https://github.com/eliteportal/data-models/raw/refs/heads/main/elite-data/manifest-templates/EL_template_AssayMetabolomicsTemplate.xlsx)
 <table id="myTable" class="display" style="width:100%">
     <thead>
     {% for column in mydata[0] %}
diff --git a/docs/template/assay_metagenomics_template.md b/docs/template/assay_metagenomics_template.md
@@ -9,7 +9,7 @@ title: assay metagenomics template
 {: .note-title } 
 >assay metagenomics template
 >
->Template for Metagenomics [[Source]](Sage Bionetworks)
+>Template for Metagenomics [[Download]](https://github.com/eliteportal/data-models/raw/refs/heads/main/elite-data/manifest-templates/EL_template_AssayMetagenomicsTemplate.xlsx)
 <table id="myTable" class="display" style="width:100%">
     <thead>
     {% for column in mydata[0] %}
diff --git a/docs/template/assay_microbiome_template.md b/docs/template/assay_microbiome_template.md
@@ -9,7 +9,7 @@ title: assay microbiome template
 {: .note-title } 
 >assay microbiome template
 >
->Template for Microbiome [[Source]](Sage Bionetworks)
+>Template for Microbiome [[Download]](https://github.com/eliteportal/data-models/raw/refs/heads/main/elite-data/manifest-templates/EL_template_AssayMicrobiomeTemplate.xlsx)
 <table id="myTable" class="display" style="width:100%">
     <thead>
     {% for column in mydata[0] %}
diff --git a/docs/template/assay_proteomics_template.md b/docs/template/assay_proteomics_template.md
@@ -9,7 +9,7 @@ title: assay proteomics template
 {: .note-title } 
 >assay proteomics template
 >
->Template for Proteomics [[Source]](Sage Bionetworks)
+>Template for Proteomics [[Download]](https://github.com/eliteportal/data-models/raw/refs/heads/main/elite-data/manifest-templates/EL_template_AssayProteomicsTemplate.xlsx)
 <table id="myTable" class="display" style="width:100%">
     <thead>
     {% for column in mydata[0] %}
diff --git a/docs/template/assay_scRNAseq_template.md b/docs/template/assay_scRNAseq_template.md
@@ -9,7 +9,7 @@ title: assay scRNAseq template
 {: .note-title } 
 >assay scRNAseq template
 >
->Template for scRNAseq [[Source]](Sage Bionetworks)
+>Template for scRNAseq [[Download]](https://github.com/eliteportal/data-models/raw/refs/heads/main/elite-data/manifest-templates/EL_template_AssayScRNAseqTemplate.xlsx)
 <table id="myTable" class="display" style="width:100%">
     <thead>
     {% for column in mydata[0] %}
diff --git a/docs/template/assay_whole_genome_sequencing_template.md b/docs/template/assay_whole_genome_sequencing_template.md
@@ -9,7 +9,7 @@ title: assay whole genome sequencing template
 {: .note-title } 
 >assay whole genome sequencing template
 >
->Template for Whole_Genome_Sequencing [[Source]](Sage Bionetworks)
+>Template for Whole_Genome_Sequencing [[Download]](https://github.com/eliteportal/data-models/raw/refs/heads/main/elite-data/manifest-templates/EL_template_AssayWholeGenomeSequencingTemplate.xlsx)
 <table id="myTable" class="display" style="width:100%">
     <thead>
     {% for column in mydata[0] %}
diff --git a/docs/template/biospecimen_human_template.md b/docs/template/biospecimen_human_template.md
@@ -9,7 +9,7 @@ title: biospecimen human template
 {: .note-title } 
 >biospecimen human template
 >
->Template for Biospecimen_human [[Source]](Sage Bionetworks)
+>Template for Biospecimen_human [[Download]](https://github.com/eliteportal/data-models/raw/refs/heads/main/elite-data/manifest-templates/EL_template_BiospecimenHumanTemplate.xlsx)
 <table id="myTable" class="display" style="width:100%">
     <thead>
     {% for column in mydata[0] %}
diff --git a/docs/template/biospecimen_non_human_template.md b/docs/template/biospecimen_non_human_template.md
@@ -9,7 +9,7 @@ title: biospecimen non human template
 {: .note-title } 
 >biospecimen non human template
 >
->Template for Biospecimen_non_Human [[Source]](Sage Bionetworks)
+>Template for Biospecimen_non_Human [[Download]](https://github.com/eliteportal/data-models/raw/refs/heads/main/elite-data/manifest-templates/EL_template_BiospecimenNonHumanTemplate.xlsx)
 <table id="myTable" class="display" style="width:100%">
     <thead>
     {% for column in mydata[0] %}
diff --git a/docs/template/file_annotation_template.md b/docs/template/file_annotation_template.md
@@ -9,7 +9,7 @@ title: file annotation template
 {: .note-title } 
 >file annotation template
 >
->Base annotations for files in synapse [[Source]](Sage Bionetworks)
+>Base annotations for files in synapse [[Download]](https://github.com/eliteportal/data-models/raw/refs/heads/main/elite-data/manifest-templates/EL_template_FileAnnotationTemplate.xlsx)
 <table id="myTable" class="display" style="width:100%">
     <thead>
     {% for column in mydata[0] %}
diff --git a/docs/template/genotyping_human_template.md b/docs/template/genotyping_human_template.md
@@ -9,7 +9,7 @@ title: genotyping human template
 {: .note-title } 
 >genotyping human template
 >
->Template for Genotyping_Human [[Source]](Sage Bionetworks)
+>Template for Genotyping_Human [[Download]](https://github.com/eliteportal/data-models/raw/refs/heads/main/elite-data/manifest-templates/EL_template_GenotypingHumanTemplate.xlsx)
 <table id="myTable" class="display" style="width:100%">
     <thead>
     {% for column in mydata[0] %}
diff --git a/docs/template/individual_human_template.md b/docs/template/individual_human_template.md
@@ -9,7 +9,7 @@ title: individual human template
 {: .note-title } 
 >individual human template
 >
->Template for Individual_Human [[Source]](Sage Bionetworks)
+>Template for Individual_Human [[Download]](https://github.com/eliteportal/data-models/raw/refs/heads/main/elite-data/manifest-templates/EL_template_IndividualHumanTemplate.xlsx)
 <table id="myTable" class="display" style="width:100%">
     <thead>
     {% for column in mydata[0] %}
diff --git a/docs/template/individual_non_human_template.md b/docs/template/individual_non_human_template.md
@@ -9,7 +9,7 @@ title: individual non human template
 {: .note-title } 
 >individual non human template
 >
->Template for Individual_non_Human [[Source]](Sage Bionetworks)
+>Template for Individual_non_Human [[Download]](https://github.com/eliteportal/data-models/raw/refs/heads/main/elite-data/manifest-templates/EL_template_IndividualNonHumanTemplate.xlsx)
 <table id="myTable" class="display" style="width:100%">
     <thead>
     {% for column in mydata[0] %}
diff --git a/docs/template/study_folder_template.md b/docs/template/study_folder_template.md
@@ -9,7 +9,7 @@ title: study folder template
 {: .note-title } 
 >study folder template
 >
->Annotations for study folders [[Source]](Sage Bionetworks)
+>Annotations for study folders [[Download]](https://github.com/eliteportal/data-models/raw/refs/heads/main/elite-data/manifest-templates/EL_template_StudyFolderTemplate.xlsx)
 <table id="myTable" class="display" style="width:100%">
     <thead>
     {% for column in mydata[0] %}

Original file line number	Diff line number	Diff line change
`@@ -9,7 +9,7 @@ title: assay RNAseq template`
`9`	`9`	`{: .note-title }`
`10`	`10`	`>assay RNAseq template`
`11`	`11`	`>`
`12`		`->Template for RNAseq [[Source]](Sage Bionetworks)`
	`12`	`+>Template for RNAseq [[Download]](https://github.com/eliteportal/data-models/raw/refs/heads/main/elite-data/manifest-templates/EL_template_AssayRNAseqTemplate.xlsx)`
`13`	`13`	`<table id="myTable" class="display" style="width:100%">`
`14`	`14`	`<thead>`
`15`	`15`	`{% for column in mydata[0] %}`
Original file line number	Diff line number	Diff line change
`@@ -9,7 +9,7 @@ title: assay bsSeq template`
`9`	`9`	`{: .note-title }`
`10`	`10`	`>assay bsSeq template`
`11`	`11`	`>`
`12`		`->Template for bsSeq [[Source]](Sage Bionetworks)`
	`12`	`+>Template for bsSeq [[Download]](https://github.com/eliteportal/data-models/raw/refs/heads/main/elite-data/manifest-templates/EL_template_AssayBsSeqTemplate.xlsx)`
`13`	`13`	`<table id="myTable" class="display" style="width:100%">`
`14`	`14`	`<thead>`
`15`	`15`	`{% for column in mydata[0] %}`
Original file line number	Diff line number	Diff line change
`@@ -9,7 +9,7 @@ title: assay metabolomics template`
`9`	`9`	`{: .note-title }`
`10`	`10`	`>assay metabolomics template`
`11`	`11`	`>`
`12`		`->Template for Metabolomics [[Source]](Sage Bionetworks)`
	`12`	`+>Template for Metabolomics [[Download]](https://github.com/eliteportal/data-models/raw/refs/heads/main/elite-data/manifest-templates/EL_template_AssayMetabolomicsTemplate.xlsx)`
`13`	`13`	`<table id="myTable" class="display" style="width:100%">`
`14`	`14`	`<thead>`
`15`	`15`	`{% for column in mydata[0] %}`
Original file line number	Diff line number	Diff line change
`@@ -9,7 +9,7 @@ title: assay metagenomics template`
`9`	`9`	`{: .note-title }`
`10`	`10`	`>assay metagenomics template`
`11`	`11`	`>`
`12`		`->Template for Metagenomics [[Source]](Sage Bionetworks)`
	`12`	`+>Template for Metagenomics [[Download]](https://github.com/eliteportal/data-models/raw/refs/heads/main/elite-data/manifest-templates/EL_template_AssayMetagenomicsTemplate.xlsx)`
`13`	`13`	`<table id="myTable" class="display" style="width:100%">`
`14`	`14`	`<thead>`
`15`	`15`	`{% for column in mydata[0] %}`
Original file line number	Diff line number	Diff line change
`@@ -9,7 +9,7 @@ title: assay microbiome template`
`9`	`9`	`{: .note-title }`
`10`	`10`	`>assay microbiome template`
`11`	`11`	`>`
`12`		`->Template for Microbiome [[Source]](Sage Bionetworks)`
	`12`	`+>Template for Microbiome [[Download]](https://github.com/eliteportal/data-models/raw/refs/heads/main/elite-data/manifest-templates/EL_template_AssayMicrobiomeTemplate.xlsx)`
`13`	`13`	`<table id="myTable" class="display" style="width:100%">`
`14`	`14`	`<thead>`
`15`	`15`	`{% for column in mydata[0] %}`
Original file line number	Diff line number	Diff line change
`@@ -9,7 +9,7 @@ title: assay proteomics template`
`9`	`9`	`{: .note-title }`
`10`	`10`	`>assay proteomics template`
`11`	`11`	`>`
`12`		`->Template for Proteomics [[Source]](Sage Bionetworks)`
	`12`	`+>Template for Proteomics [[Download]](https://github.com/eliteportal/data-models/raw/refs/heads/main/elite-data/manifest-templates/EL_template_AssayProteomicsTemplate.xlsx)`
`13`	`13`	`<table id="myTable" class="display" style="width:100%">`
`14`	`14`	`<thead>`
`15`	`15`	`{% for column in mydata[0] %}`
Original file line number	Diff line number	Diff line change
`@@ -9,7 +9,7 @@ title: assay scRNAseq template`
`9`	`9`	`{: .note-title }`
`10`	`10`	`>assay scRNAseq template`
`11`	`11`	`>`
`12`		`->Template for scRNAseq [[Source]](Sage Bionetworks)`
	`12`	`+>Template for scRNAseq [[Download]](https://github.com/eliteportal/data-models/raw/refs/heads/main/elite-data/manifest-templates/EL_template_AssayScRNAseqTemplate.xlsx)`
`13`	`13`	`<table id="myTable" class="display" style="width:100%">`
`14`	`14`	`<thead>`
`15`	`15`	`{% for column in mydata[0] %}`
Original file line number	Diff line number	Diff line change
`@@ -9,7 +9,7 @@ title: assay whole genome sequencing template`
`9`	`9`	`{: .note-title }`
`10`	`10`	`>assay whole genome sequencing template`
`11`	`11`	`>`
`12`		`->Template for Whole_Genome_Sequencing [[Source]](Sage Bionetworks)`
	`12`	`+>Template for Whole_Genome_Sequencing [[Download]](https://github.com/eliteportal/data-models/raw/refs/heads/main/elite-data/manifest-templates/EL_template_AssayWholeGenomeSequencingTemplate.xlsx)`
`13`	`13`	`<table id="myTable" class="display" style="width:100%">`
`14`	`14`	`<thead>`
`15`	`15`	`{% for column in mydata[0] %}`
Original file line number	Diff line number	Diff line change
`@@ -9,7 +9,7 @@ title: biospecimen human template`
`9`	`9`	`{: .note-title }`
`10`	`10`	`>biospecimen human template`
`11`	`11`	`>`
`12`		`->Template for Biospecimen_human [[Source]](Sage Bionetworks)`
	`12`	`+>Template for Biospecimen_human [[Download]](https://github.com/eliteportal/data-models/raw/refs/heads/main/elite-data/manifest-templates/EL_template_BiospecimenHumanTemplate.xlsx)`
`13`	`13`	`<table id="myTable" class="display" style="width:100%">`
`14`	`14`	`<thead>`
`15`	`15`	`{% for column in mydata[0] %}`
Original file line number	Diff line number	Diff line change
`@@ -9,7 +9,7 @@ title: biospecimen non human template`
`9`	`9`	`{: .note-title }`
`10`	`10`	`>biospecimen non human template`
`11`	`11`	`>`
`12`		`->Template for Biospecimen_non_Human [[Source]](Sage Bionetworks)`
	`12`	`+>Template for Biospecimen_non_Human [[Download]](https://github.com/eliteportal/data-models/raw/refs/heads/main/elite-data/manifest-templates/EL_template_BiospecimenNonHumanTemplate.xlsx)`
`13`	`13`	`<table id="myTable" class="display" style="width:100%">`
`14`	`14`	`<thead>`
`15`	`15`	`{% for column in mydata[0] %}`