updated unknown module column types for curator compatibility

melissarklein · melissarklein · commit ce33445609ae · 2026-01-07T17:47:31.000Z
diff --git a/modules/Unknown/Component.csv b/modules/Unknown/Component.csv
@@ -1,2 +1,2 @@
 Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn
-Component,,,,,,,,,,Unknown,,,,,"assay_RNAseq_template,assay_bsSeq_template,assay_metabolomics_template,assay_metagenomics_template,assay_microbiome_template,assay_phenotype_human_template,assay_proteomics_template,assay_scRNAseq_template,assay_whole_genome_sequencing_template,biospecimen_human_template,biospecimen_non_human_template,file_annotation_template,genotyping_human_template,individual_human_template,individual_non_human_template,study_folder_template"
+Component,,,,,,,,,,Unknown,,STRING,,,"assay_RNAseq_template,assay_bsSeq_template,assay_metabolomics_template,assay_metagenomics_template,assay_microbiome_template,assay_phenotype_human_template,assay_proteomics_template,assay_scRNAseq_template,assay_whole_genome_sequencing_template,biospecimen_human_template,biospecimen_non_human_template,file_annotation_template,genotyping_human_template,individual_human_template,individual_non_human_template,study_folder_template"
diff --git a/modules/Unknown/accessReqs.csv b/modules/Unknown/accessReqs.csv
@@ -1,2 +1,2 @@
 Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn
-accessReqs,,,,,,,,,,Unknown,,,,,study_folder_template
+accessReqs,,,,,,,,,,Unknown,,STRING,,,study_folder_template
diff --git a/modules/Unknown/ackContext.csv b/modules/Unknown/ackContext.csv
@@ -1,2 +1,2 @@
 Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn
-ackContext,,,,,,,,,,Unknown,,,,,study_folder_template
+ackContext,,,,,,,,,,Unknown,,STRING,,,study_folder_template
diff --git a/modules/Unknown/acknowledgment.csv b/modules/Unknown/acknowledgment.csv
@@ -1,2 +1,2 @@
 Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn
-acknowledgment,,,,,,,,,,Unknown,,,,,study_folder_template
+acknowledgment,,,,,,,,,,Unknown,,STRING,,,study_folder_template
diff --git a/modules/Unknown/acquistionSoftwareVersion.csv b/modules/Unknown/acquistionSoftwareVersion.csv
@@ -1,2 +1,2 @@
 Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn
-acquistionSoftwareVersion,,,,,,,,,,Unknown,,,,,assay_metabolomics_template
+acquistionSoftwareVersion,,,,,,,,,,Unknown,,STRING,,,assay_metabolomics_template
diff --git a/modules/Unknown/batchSizeUnit.csv b/modules/Unknown/batchSizeUnit.csv
@@ -1,2 +1,2 @@
 Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn
-batchSizeUnit,,,,,,,,,,Unknown,,,,,assay_metabolomics_template
+batchSizeUnit,,,,,,,,,,Unknown,,STRING,,,assay_metabolomics_template
diff --git a/modules/Unknown/experimentalBatchSize.csv b/modules/Unknown/experimentalBatchSize.csv
@@ -1,2 +1,2 @@
 Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn
-experimentalBatchSize,,,,,,,,,,Unknown,,,,,assay_metabolomics_template
+experimentalBatchSize,,,,,,,,,,Unknown,,INTEGER,,,assay_metabolomics_template
diff --git a/modules/Unknown/grantNumber.csv b/modules/Unknown/grantNumber.csv
@@ -1,2 +1,2 @@
 Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn
-grantNumber,"Grant number including activity code institute code and serial number (e.g. U01MH103392)","U19AG063893,U24AG051129,U19AG023122,UH2AG064706,UH3AG064706,UH2AG064704,UH3AG064704,R01AG061844, Not assigned",,,True,ManifestColumn,,ManifestColumn,Sage Bionetworks,Unknown,True,STRING_LIST,Sage Bionetworks,,study_folder_template
+grantNumber,"Grant number including activity code institute code and serial number (e.g. U01MH103392)","U19AG063893,U24AG051129,U19AG023122,UH2AG064706,UH3AG064706,UH2AG064704,UH3AG064704,R01AG061844, Not assigned",,,True,ManifestColumn,,ManifestColumn,Sage Bionetworks,Unknown,True,STRING,Sage Bionetworks,,study_folder_template
diff --git a/modules/Unknown/isFeatured.csv b/modules/Unknown/isFeatured.csv
@@ -1,2 +1,2 @@
 Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn
-isFeatured,,,,,,,,,,Unknown,,,,,study_folder_template
+isFeatured,,,,,,,,,,Unknown,,BOOLEAN,,,study_folder_template
diff --git a/modules/Unknown/isReleased.csv b/modules/Unknown/isReleased.csv
@@ -1,2 +1,2 @@
 Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn
-isReleased,,,,,,,,,,Unknown,,,,,study_folder_template
+isReleased,,,,,,,,,,Unknown,,BOOLEAN,,,study_folder_template
diff --git a/modules/Unknown/metadataType.csv b/modules/Unknown/metadataType.csv
@@ -1,2 +1,2 @@
 Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn
-metadataType,"For files of dataSubtype: metadata, a description of the type of metadata in the file","individual,biospecimen,assay,supplementary files,Not Assigned",,,False,ManifestColumn,,ManifestColumn,Sage Bionetworks,Unknown,True,STRING_LIST,Sage Bionetworks,,"study_folder_template, file_annotation_template"
+metadataType,"For files of dataSubtype: metadata, a description of the type of metadata in the file","individual,biospecimen,assay,supplementary files,Not Assigned",,,False,ManifestColumn,,ManifestColumn,Sage Bionetworks,Unknown,True,STRING,Sage Bionetworks,,"study_folder_template, file_annotation_template"
diff --git a/modules/Unknown/methods.csv b/modules/Unknown/methods.csv
@@ -1,2 +1,2 @@
 Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn
-methods,,,,,,,,,,Unknown,,,,,study_folder_template
+methods,,,,,,,,,,Unknown,,STRING,,,study_folder_template
diff --git a/modules/Unknown/newsRelease.csv b/modules/Unknown/newsRelease.csv
@@ -1,2 +1,2 @@
 Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn
-newsRelease,,,,,,,,,,Unknown,,,,,study_folder_template
+newsRelease,,,,,,,,,,Unknown,,STRING,,,study_folder_template
diff --git a/modules/Unknown/processingBatchSize.csv b/modules/Unknown/processingBatchSize.csv
@@ -1,2 +1,2 @@
 Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn
-processingBatchSize,,,,,,,,,,Unknown,,,,,assay_metabolomics_template
+processingBatchSize,,,,,,,,,,Unknown,,INTEGER,,,assay_metabolomics_template
diff --git a/modules/Unknown/processingBatchSizeUnit.csv b/modules/Unknown/processingBatchSizeUnit.csv
@@ -1,2 +1,2 @@
 Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn
-processingBatchSizeUnit,,,,,,,,,,Unknown,,,,,assay_metabolomics_template
+processingBatchSizeUnit,,,,,,,,,,Unknown,,STRING,,,assay_metabolomics_template
diff --git a/modules/Unknown/projectFullName.csv b/modules/Unknown/projectFullName.csv
@@ -1,2 +1,2 @@
 Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn
-projectFullName,,,,,,,,,,Unknown,,,,,study_folder_template
+projectFullName,,,,,,,,,,Unknown,,STRING,,,study_folder_template
diff --git a/modules/Unknown/relatedStudies.csv b/modules/Unknown/relatedStudies.csv
@@ -1,2 +1,2 @@
 Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn
-relatedStudies,,,,,,,,,,Unknown,,,,,study_folder_template
+relatedStudies,,,,,,,,,,Unknown,,STRING,,,study_folder_template
diff --git a/modules/Unknown/sampleBatchSize.csv b/modules/Unknown/sampleBatchSize.csv
@@ -1,2 +1,2 @@
 Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn
-sampleBatchSize,,,,,,,,,,Unknown,,,,,assay_metabolomics_template
+sampleBatchSize,,,,,,,,,,Unknown,,INTEGER,,,assay_metabolomics_template
diff --git a/modules/Unknown/sampleBatchSizeUnit.csv b/modules/Unknown/sampleBatchSizeUnit.csv
@@ -1,2 +1,2 @@
 Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn
-sampleBatchSizeUnit,,,,,,,,,,Unknown,,,,,assay_metabolomics_template
+sampleBatchSizeUnit,,,,,,,,,,Unknown,,STRING,,,assay_metabolomics_template
diff --git a/modules/Unknown/studyAbstract.csv b/modules/Unknown/studyAbstract.csv
@@ -1,2 +1,2 @@
 Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn
-studyAbstract,,,,,,,,,,Unknown,,,,,study_folder_template
+studyAbstract,,,,,,,,,,Unknown,,STRING,,,study_folder_template
diff --git a/modules/Unknown/studyDescription.csv b/modules/Unknown/studyDescription.csv
@@ -1,2 +1,2 @@
 Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn
-studyDescription,,,,,,,,,,Unknown,,,,,study_folder_template
+studyDescription,,,,,,,,,,Unknown,,STRING,,,study_folder_template
diff --git a/modules/Unknown/studyFocus.csv b/modules/Unknown/studyFocus.csv
@@ -1,2 +1,2 @@
 Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn
-studyFocus,,,,,,,,,,Unknown,,,,,study_folder_template
+studyFocus,,,,,,,,,,Unknown,,STRING,,,study_folder_template
diff --git a/modules/Unknown/studyMetadata.csv b/modules/Unknown/studyMetadata.csv
@@ -1,2 +1,2 @@
 Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn
-studyMetadata,,,,,,,,,,Unknown,,,,,study_folder_template
+studyMetadata,,,,,,,,,,Unknown,,STRING,,,study_folder_template
diff --git a/modules/Unknown/studyName.csv b/modules/Unknown/studyName.csv
@@ -1,2 +1,2 @@
 Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn
-studyName,,,,,,,,,,Unknown,,,,,study_folder_template
+studyName,,,,,,,,,,Unknown,,STRING,,,study_folder_template
diff --git a/modules/Unknown/studyType.csv b/modules/Unknown/studyType.csv
@@ -1,2 +1,2 @@
 Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn
-studyType,,,,,,,,,,Unknown,,,,,study_folder_template
+studyType,,,,,,,,,,Unknown,,STRING,,,study_folder_template
diff --git a/modules/Unknown/studyWiki.csv b/modules/Unknown/studyWiki.csv
@@ -1,2 +1,2 @@
 Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn
-studyWiki,,,,,,,,,,Unknown,,,,,study_folder_template
+studyWiki,,,,,,,,,,Unknown,,STRING,,,study_folder_template

Original file line number	Diff line number	Diff line change
`@@ -1,2 +1,2 @@`
`1`	`1`	`Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn`
`2`		`-Component,,,,,,,,,,Unknown,,,,,"assay_RNAseq_template,assay_bsSeq_template,assay_metabolomics_template,assay_metagenomics_template,assay_microbiome_template,assay_phenotype_human_template,assay_proteomics_template,assay_scRNAseq_template,assay_whole_genome_sequencing_template,biospecimen_human_template,biospecimen_non_human_template,file_annotation_template,genotyping_human_template,individual_human_template,individual_non_human_template,study_folder_template"`
	`2`	`+Component,,,,,,,,,,Unknown,,STRING,,,"assay_RNAseq_template,assay_bsSeq_template,assay_metabolomics_template,assay_metagenomics_template,assay_microbiome_template,assay_phenotype_human_template,assay_proteomics_template,assay_scRNAseq_template,assay_whole_genome_sequencing_template,biospecimen_human_template,biospecimen_non_human_template,file_annotation_template,genotyping_human_template,individual_human_template,individual_non_human_template,study_folder_template"`
Original file line number	Diff line number	Diff line change
`@@ -1,2 +1,2 @@`
`1`	`1`	`Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn`
`2`		`-accessReqs,,,,,,,,,,Unknown,,,,,study_folder_template`
	`2`	`+accessReqs,,,,,,,,,,Unknown,,STRING,,,study_folder_template`
Original file line number	Diff line number	Diff line change
`@@ -1,2 +1,2 @@`
`1`	`1`	`Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn`
`2`		`-ackContext,,,,,,,,,,Unknown,,,,,study_folder_template`
	`2`	`+ackContext,,,,,,,,,,Unknown,,STRING,,,study_folder_template`
Original file line number	Diff line number	Diff line change
`@@ -1,2 +1,2 @@`
`1`	`1`	`Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn`
`2`		`-acknowledgment,,,,,,,,,,Unknown,,,,,study_folder_template`
	`2`	`+acknowledgment,,,,,,,,,,Unknown,,STRING,,,study_folder_template`
Original file line number	Diff line number	Diff line change
`@@ -1,2 +1,2 @@`
`1`	`1`	`Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn`
`2`		`-acquistionSoftwareVersion,,,,,,,,,,Unknown,,,,,assay_metabolomics_template`
	`2`	`+acquistionSoftwareVersion,,,,,,,,,,Unknown,,STRING,,,assay_metabolomics_template`
Original file line number	Diff line number	Diff line change
`@@ -1,2 +1,2 @@`
`1`	`1`	`Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn`
`2`		`-batchSizeUnit,,,,,,,,,,Unknown,,,,,assay_metabolomics_template`
	`2`	`+batchSizeUnit,,,,,,,,,,Unknown,,STRING,,,assay_metabolomics_template`
Original file line number	Diff line number	Diff line change
`@@ -1,2 +1,2 @@`
`1`	`1`	`Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn`
`2`		`-experimentalBatchSize,,,,,,,,,,Unknown,,,,,assay_metabolomics_template`
	`2`	`+experimentalBatchSize,,,,,,,,,,Unknown,,INTEGER,,,assay_metabolomics_template`
Original file line number	Diff line number	Diff line change
`@@ -1,2 +1,2 @@`
`1`	`1`	`Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn`
`2`		`-grantNumber,"Grant number including activity code institute code and serial number (e.g. U01MH103392)","U19AG063893,U24AG051129,U19AG023122,UH2AG064706,UH3AG064706,UH2AG064704,UH3AG064704,R01AG061844, Not assigned",,,True,ManifestColumn,,ManifestColumn,Sage Bionetworks,Unknown,True,STRING_LIST,Sage Bionetworks,,study_folder_template`
	`2`	`+grantNumber,"Grant number including activity code institute code and serial number (e.g. U01MH103392)","U19AG063893,U24AG051129,U19AG023122,UH2AG064706,UH3AG064706,UH2AG064704,UH3AG064704,R01AG061844, Not assigned",,,True,ManifestColumn,,ManifestColumn,Sage Bionetworks,Unknown,True,STRING,Sage Bionetworks,,study_folder_template`
Original file line number	Diff line number	Diff line change
`@@ -1,2 +1,2 @@`
`1`	`1`	`Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn`
`2`		`-isFeatured,,,,,,,,,,Unknown,,,,,study_folder_template`
	`2`	`+isFeatured,,,,,,,,,,Unknown,,BOOLEAN,,,study_folder_template`
Original file line number	Diff line number	Diff line change
`@@ -1,2 +1,2 @@`
`1`	`1`	`Attribute,Description,Valid Values,DependsOn,DependsOn Component,Required,Parent,Validation Rules,Properties,Source,module,multivalue,columnType,Ontology,Notes,UsedIn`
`2`		`-isReleased,,,,,,,,,,Unknown,,,,,study_folder_template`
	`2`	`+isReleased,,,,,,,,,,Unknown,,BOOLEAN,,,study_folder_template`