diff --git a/.devcontainer/Dockerfile b/.devcontainer/Dockerfile new file mode 100644 index 0000000..901c172 --- /dev/null +++ b/.devcontainer/Dockerfile @@ -0,0 +1,65 @@ +# syntax=docker/dockerfile:1 + +############################################################################### +# Stage 1: Base image +############################################################################### + +ARG PYTHON_VERSION=3.13.0 +FROM python:${PYTHON_VERSION} as base + +ENV PYTHONUNBUFFERED=1 \ + PYTHONDONTWRITEBYTECODE=1 + +RUN apt-get update && export DEBIAN_FRONTEND=noninteractive \ + && apt-get -y install --no-install-recommends \ + git \ + zsh \ + && apt-get clean -y \ + && rm -rf /var/lib/apt/lists/* + +############################################################################### +# Stage 2: Poetry Install +############################################################################### + +FROM base as poetry-installer + +ENV POETRY_VIRTUALENVS_IN_PROJECT=false \ + POETRY_NO_INTERACTION=1 + +RUN curl -sSL https://install.python-poetry.org | python3 - \ + && ln -s /root/.local/bin/poetry /usr/local/bin/poetry + +############################################################################### +# Stage 3: Zsh Configuration +############################################################################### + +FROM poetry-installer as zsh-config + +ENV ZSH_CUSTOM=/root/.oh-my-zsh/custom + +# Install Oh My Zsh and clone plugins +RUN sh -c "$(curl -fsSL https://raw.githubusercontent.com/ohmyzsh/ohmyzsh/master/tools/install.sh)" "" --unattended \ + && git clone https://github.com/zsh-users/zsh-autosuggestions.git ${ZSH_CUSTOM}/plugins/zsh-autosuggestions \ + && git clone https://github.com/zdharma-continuum/fast-syntax-highlighting.git ${ZSH_CUSTOM}/plugins/fast-syntax-highlighting + +# Clone asdf scripts +RUN git clone https://github.com/asdf-vm/asdf.git ~/.asdf + +# Install direnv +RUN curl -sfL https://direnv.net/install.sh | bash + +COPY .devcontainer/override.zshrc /tmp/override.zshrc +RUN cat /tmp/override.zshrc >> ~/.zshrc \ + && chsh -s $(which zsh) + +############################################################################### +# Stage 4: Development +############################################################################### + +FROM zsh-config as development + +WORKDIR /workspaces/jupyterhub + +ENV SHELL=/bin/zsh + +CMD ["zsh"] diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json new file mode 100644 index 0000000..24948c4 --- /dev/null +++ b/.devcontainer/devcontainer.json @@ -0,0 +1,85 @@ +{ + "name": "PAC Jupyterhub Dev Env", + "build": { + "dockerfile": "Dockerfile", + "context": "..", + "args": { + "PYTHON_VERSION": "3.13.0" + } + }, + "features": { + "ghcr.io/devcontainers/features/docker-outside-of-docker:1": { + "moby": true, + "installDockerBuildx": true, + "version": "latest", + "dockerDashComposeVersion": "v2" + } + }, + "mounts": [ + "source=/var/run/docker.sock,target=/var/run/docker.sock,type=bind" + ], + "customizations": { + "vscode": { + "extensions": [ + "charliermarsh.ruff", + "davidanson.vscode-markdownlint", + "EditorConfig.EditorConfig", + "github.vscode-github-actions", + "ms-azuretools.vscode-docker", + "ms-python.mypy-type-checker", + "ms-python.python", + "redhat.vscode-yaml", + "streetsidesoftware.code-spell-checker-cspell-bundled-dictionaries", + "tamasfe.even-better-toml", + "tekumara.typos-vscode" + ], + "settings": { + "python.defaultInterpreterPath": "/usr/local/bin/python", + "python.linting.enabled": true, + "python.formatting.provider": "none", + "python.testing.pytestEnabled": true, + "python.testing.unittestEnabled": false, + "python.testing.nosetestsEnabled": false, + "python.analysis.typeCheckingMode": "basic", + "python.analysis.diagnosticMode": "workspace", + "editor.formatOnSave": true, + "editor.formatOnPaste": true, + "editor.bracketPairColorization.enabled": true, + "editor.guides.bracketPairs": true, + "editor.suggestSelection": "first", + "editor.codeActionsOnSave": { + "source.fixAll": true, + "source.organizeImports": true + }, + "[python]": { + "editor.defaultFormatter": "charliermarsh.ruff", + "editor.formatOnSave": true, + "editor.codeActionsOnSave": { + "source.fixAll": true, + "source.organizeImports": true + }, + "editor.rulers": [ + 80 + ] + }, + "[markdown]": { + "editor.defaultFormatter": "DavidAnson.vscode-markdownlint", + "editor.wordWrap": "on", + "editor.rulers": [ + 80 + ] + }, + "[yaml]": { + "editor.defaultFormatter": "redhat.vscode-yaml", + "editor.autoIndent": "keep" + }, + "[toml]": { + "editor.defaultFormatter": "tamasfe.even-better-toml" + }, + "mypy.runUsingActiveInterpreter": true + } + } + }, + "postCreateCommand": "[ -d .venv ] && rm -rf .venv; make venv && . .venv/bin/activate && make install", + "remoteUser": "root" +} diff --git a/.devcontainer/override.zshrc b/.devcontainer/override.zshrc new file mode 100644 index 0000000..8c07d7f --- /dev/null +++ b/.devcontainer/override.zshrc @@ -0,0 +1,24 @@ +# Path to your oh-my-zsh installation +export ZSH="/root/.oh-my-zsh" + +# Plugins +plugins=( + asdf # Sets up asdf version manager + direnv # Loads .envrc files + git # Adds git command aliases and useful prompt info + docker # Provides docker command completion and aliases + zsh-autosuggestions # Suggests commands based on history + fast-syntax-highlighting # Adds syntax highlighting while typing +) + +# Load oh-my-zsh with the configured settings +source $ZSH/oh-my-zsh.sh + +# Load asdf +. "$HOME/.asdf/asdf.sh" + +# Initialize direnv +eval "$(direnv hook zsh)" + +# Attempt to activate the Python virtual environment for every session +source /workspaces/jupyterhub/.venv/bin/activate 2>/dev/null || true diff --git a/.dockerignore b/.dockerignore new file mode 100644 index 0000000..072207c --- /dev/null +++ b/.dockerignore @@ -0,0 +1,38 @@ +# Ignore cache +__pycache__/ +*.pyc +*.pyo +*.pyd +.ruff_cache/ + +# Ignore virtual environments +.venv/ + +# Ignore version control files and directories +.git/ +.gitignore + +# Ignore CI/CD and deployment-related files +.github/ +.dockerignore +.pre-commit-config.yaml +.safety-policy.yml +.readthedocs.yaml +.yamllint.yaml +.tool-versions + +# Ignore markdown files (e.g., documentation) +*.md + +# Ignore environment files (for local development) +.env + +# Ignore deployment files +deployment/ + +# Ignore documentation and images +docs/ +images/ + +# Ignore test files and directories +tests/ diff --git a/.editorconfig b/.editorconfig new file mode 100644 index 0000000..2970d73 --- /dev/null +++ b/.editorconfig @@ -0,0 +1,28 @@ +# EditorConfig is a file format that helps maintain consistent coding styles +# https://editorconfig.org/ + +# top-most EditorConfig file +root = true + +# Unix-style newlines with a newline ending every file +[*] +end_of_line = lf +insert_final_newline = true +charset = utf-8 +trim_trailing_whitespace = true +indent_style = space +indent_size = 4 + +# Python files +[*.py] +max_line_length = 80 +quote_type = double + +[*.md] +max_line_length = 80 + +[*.{json,yml,yaml}] +indent_size = 2 + +[Makefile] +indent_style = tab diff --git a/.gitattributes b/.gitattributes new file mode 100644 index 0000000..60fb976 --- /dev/null +++ b/.gitattributes @@ -0,0 +1,30 @@ +# Auto detect text files and perform line-ending normalization +* text=auto + +# Python files +*.py text diff=python +*.pyi text diff=python + +# Documentation +*.md text diff=markdown +*.rst text diff=rst +*.bat text eol=crlf +Makefile text eol=lf + +# Configuration files +*.toml text diff=toml +*.json text + +# SVG treated as binary to prevent merge conflicts +*.svg binary + +# Declare files that should have specific line endings +LICENSE text eol=lf + +# Exclude files from statistics +images/* linguist-vendored +docs/* linguist-documentation + +# Fix syntax highlighting on GitHub to allow comments +.devcontainer.json linguist-language=JSON-with-Comments +devcontainer.json linguist-language=JSON-with-Comments diff --git a/.github/ISSUE_TEMPLATE/bug-report.yml b/.github/ISSUE_TEMPLATE/bug-report.yml new file mode 100644 index 0000000..b41886f --- /dev/null +++ b/.github/ISSUE_TEMPLATE/bug-report.yml @@ -0,0 +1,50 @@ +--- +name: 🪲 Bug Report +description: Report a bug +title: "[Bug 🪲]: " +labels: ["bug"] +body: + - type: input + id: description + attributes: + label: Description + description: Small description of the bug + placeholder: "I have a problem with..." + validations: + required: true + - type: textarea + id: reproduction + attributes: + label: Reproduction + description: Steps to reproduce the bug + value: | + 1. Step 1 + 2. Step 2 + 3. Step 3 + validations: + required: false + - type: textarea + id: traceback + attributes: + label: Error Traceback + description: Full error traceback if applicable + render: python + validations: + required: false + - type: textarea + id: dependencies + attributes: + label: Dependencies + description: Output of `pip freeze` + render: text + validations: + required: false + - type: textarea + id: environment + attributes: + label: environment + description: Output of `poetry env info` + render: text + validations: + required: false +... diff --git a/.github/ISSUE_TEMPLATE/config.yml b/.github/ISSUE_TEMPLATE/config.yml new file mode 100644 index 0000000..5d7a27e --- /dev/null +++ b/.github/ISSUE_TEMPLATE/config.yml @@ -0,0 +1,3 @@ +--- +blank_issues_enabled: false +... diff --git a/.github/ISSUE_TEMPLATE/dependency-issue.yml b/.github/ISSUE_TEMPLATE/dependency-issue.yml new file mode 100644 index 0000000..3a29c8a --- /dev/null +++ b/.github/ISSUE_TEMPLATE/dependency-issue.yml @@ -0,0 +1,30 @@ +--- +name: 📦 Dependency Issue +description: Report dependency conflicts or version issues +title: "[Deps 📦]: " +labels: ["dependencies"] +body: + - type: textarea + id: conflict + attributes: + label: Conflict Description + description: Describe the dependency conflict + validations: + required: true + - type: textarea + id: dependencies + attributes: + label: Dependencies + description: Output of `pip freeze` + render: text + validations: + required: true + - type: textarea + id: environment + attributes: + label: environment + description: Output of `poetry env info` + render: text + validations: + required: true +... diff --git a/.github/ISSUE_TEMPLATE/documentation.yml b/.github/ISSUE_TEMPLATE/documentation.yml new file mode 100644 index 0000000..250e19f --- /dev/null +++ b/.github/ISSUE_TEMPLATE/documentation.yml @@ -0,0 +1,21 @@ +--- +name: 📚 Documentation Issue +description: Report issues with documentation +title: "[Docs 📚]: " +labels: ["documentation"] +body: + - type: input + id: page_url + attributes: + label: Documentation Page URL + description: Link to the documentation page + validations: + required: true + - type: textarea + id: issue_description + attributes: + label: Issue Description + description: Describe what needs to be updated + validations: + required: true +... diff --git a/.github/ISSUE_TEMPLATE/feature-request.yml b/.github/ISSUE_TEMPLATE/feature-request.yml new file mode 100644 index 0000000..ac86183 --- /dev/null +++ b/.github/ISSUE_TEMPLATE/feature-request.yml @@ -0,0 +1,35 @@ +--- +name: 💡 Feature Request +description: Suggest a new feature or improvement +title: "[Feat 💡]: " +labels: ["enhancement"] +body: + - type: textarea + id: problem + attributes: + label: Problem Statement + description: What problem are you trying to solve? + validations: + required: true + - type: textarea + id: solution + attributes: + label: Proposed Solution + description: Describe your proposed solution + validations: + required: true + - type: textarea + id: alternatives + attributes: + label: Alternatives Considered + description: What alternatives have you considered? + validations: + required: false + - type: textarea + id: context + attributes: + label: Additional Context + description: Add any other context about the feature request + validations: + required: false +... diff --git a/.github/ISSUE_TEMPLATE/general.yml b/.github/ISSUE_TEMPLATE/general.yml new file mode 100644 index 0000000..ae685bd --- /dev/null +++ b/.github/ISSUE_TEMPLATE/general.yml @@ -0,0 +1,68 @@ +--- +name: 🔧 General Issue +description: Create a general issue report +labels: ["triage"] +body: + - type: dropdown + id: type + attributes: + label: Issue Type + description: What type of issue is this? + options: + - Bug Report + - Feature Request + - Documentation + - Question + - Other + validations: + required: true + - type: textarea + id: description + attributes: + label: Description + description: Clear and concise description of the issue + placeholder: | + For bugs: What happened? What did you expect to happen? + For features: What need are you trying to address? + validations: + required: true + - type: textarea + id: reproduction + attributes: + label: Steps to Reproduce + description: Clear steps to reproduce the behavior (if applicable) + placeholder: | + 1. Go to '...' + 2. Click on '...' + 3. See error + validations: + required: false + - type: textarea + id: solution + attributes: + label: Proposed Solution + description: Your ideas for implementing the feature or fixing the bug + placeholder: I think this could be solved by... + validations: + required: false + - type: textarea + id: context + attributes: + label: Additional Context + description: Any other context, screenshots, or relevant information + placeholder: | + - Environment details + - Related issues + - Links to documentation + validations: + required: false + - type: checkboxes + id: checks + attributes: + label: Pre-submission Checklist + options: + - label: I have gone through the documentation + required: true + - label: This issue hasn't been reported before + required: true +... diff --git a/.github/ISSUE_TEMPLATE/performance.yml b/.github/ISSUE_TEMPLATE/performance.yml new file mode 100644 index 0000000..05463e7 --- /dev/null +++ b/.github/ISSUE_TEMPLATE/performance.yml @@ -0,0 +1,21 @@ +--- +name: ⚡ Performance Issue +description: Report performance problems +title: "[Perf ⚡]: " +labels: ["performance"] +body: + - type: textarea + id: scenario + attributes: + label: Performance Scenario + description: Describe the performance issue + validations: + required: true + - type: textarea + id: metrics + attributes: + label: Performance Metrics + description: Include relevant metrics/benchmarks + validations: + required: true +... diff --git a/.github/ISSUE_TEMPLATE/question.yml b/.github/ISSUE_TEMPLATE/question.yml new file mode 100644 index 0000000..c2ca2c7 --- /dev/null +++ b/.github/ISSUE_TEMPLATE/question.yml @@ -0,0 +1,23 @@ +--- +name: ❓ Question +description: Ask a question about this project +title: "[Ques ❓]: " +labels: ["question"] +body: + - type: textarea + id: question + attributes: + label: Your Question + description: What would you like to know? + validations: + required: true + - type: checkboxes + id: checks + attributes: + label: First Check + options: + - label: I have gone through the documentation + required: true + - label: This issue hasn't been reported before + required: true +... diff --git a/.github/actions/setup/poetry/action.yaml b/.github/actions/setup/poetry/action.yaml new file mode 100644 index 0000000..b6522bc --- /dev/null +++ b/.github/actions/setup/poetry/action.yaml @@ -0,0 +1,97 @@ +--- +name: Setup Python and Poetry Action +description: Configure system, Python, Poetry and deps and cache management. + +inputs: + os: + default: ubuntu-latest + description: The operating system to use + python-version: + default: '3.11' + description: The version of Python to use + poetry-version: + default: '1.8.2' + description: The version of Poetry to install + poetry-install-options: + default: '' + description: Additional options to pass to poetry install + poetry-export-options: + default: '' + description: Options to pass to poetry export for hash generation for cache + invalidation + +runs: + using: composite + steps: + - uses: 'actions/setup-python@v5' + id: setup-python + with: + python-version: '${{ inputs.python-version }}' + + - name: Setup pipx environment Variables + id: pipx-env-setup + # pipx default home and bin dir are not writable by the cache action + # so override them here and add the bin dir to PATH for later steps. + # This also ensures the pipx cache only contains poetry + run: | + SEP="${{ !startsWith(runner.os, 'windows') && '/' || '\\' }}" + PIPX_CACHE="${{ github.workspace }}${SEP}pipx_cache" + echo "pipx-cache-path=${PIPX_CACHE}" >> $GITHUB_OUTPUT + echo "pipx-version=$(pipx --version)" >> $GITHUB_OUTPUT + echo "PIPX_HOME=${PIPX_CACHE}${SEP}home" >> $GITHUB_ENV + echo "PIPX_BIN_DIR=${PIPX_CACHE}${SEP}bin" >> $GITHUB_ENV + echo "PIPX_MAN_DIR=${PIPX_CACHE}${SEP}man" >> $GITHUB_ENV + echo "${PIPX_CACHE}${SEP}bin" >> $GITHUB_PATH + shell: bash + + - name: Pipx cache + id: pipx-cache + uses: actions/cache@v4 + with: + path: ${{ steps.pipx-env-setup.outputs.pipx-cache-path }} + key: ${{ runner.os }}-python- + ${{ steps.setup-python.outputs.python-version }}- + pipx-${{ steps.pipx-env-setup.outputs.pipx-version }}- + poetry-${{ inputs.poetry-version }} + + - name: Install poetry + if: steps.pipx-cache.outputs.cache-hit != 'true' + id: install-poetry + shell: bash + run: | + pipx install poetry \ + --python "${{ steps.setup-python.outputs.python-path }}" + + - name: Read poetry cache location + id: poetry-cache-location + shell: bash + run: | + echo "poetry-venv-location=$(poetry config virtualenvs.path)" \ + >> $GITHUB_OUTPUT + + - name: Add plugin to be able to export + run: | + poetry self add poetry-plugin-export + shell: bash + + - name: Generate hash only for required deps + run: | + poetry export ${{ inputs.poetry-export-options }} \ + --format=requirements.txt --output=requirements.txt + echo "DEP_HASH=$(sha256sum requirements.txt | cut -d ' ' -f 1)" \ + >> $GITHUB_ENV + shell: bash + + - uses: actions/cache@v4 + name: Poetry cache + with: + path: ${{ steps.poetry-cache-location.outputs.poetry-venv-location }} + key: ${{ runner.os }}-[python- + ${{ steps.setup-python.outputs.python-version }}]-[ + ${{ env.DEP_HASH }}]-[${{ inputs.poetry-install-options }}] + + - name: 'Poetry install' + if: steps.poetry-cache.outputs.cache-hit != 'true' + shell: bash + run: poetry install ${{ inputs.poetry-install-options }} --no-interaction +... diff --git a/.github/workflows/code_quality.yaml b/.github/workflows/code_quality.yaml new file mode 100644 index 0000000..86b5575 --- /dev/null +++ b/.github/workflows/code_quality.yaml @@ -0,0 +1,145 @@ +--- +name: Code quality + +on: + push: + branches: + - main + pull_request: + branches: + - main + +jobs: + # format: + # name: Format + # runs-on: ubuntu-latest + # steps: + # - name: Check out repository + # uses: actions/checkout@v4 + + # - name: Set up environment + # uses: ./.github/actions/setup/poetry + # with: + # os: ${{ job.os }} + # python-version: '3.13.0' + # poetry-install-options: "--only=code_quality --no-root" + # poetry-export-options: "--only=code_quality" + + # - name: Check code style + # run: poetry run ruff format --check + + # - name: Checkout code + # uses: actions/checkout@v4 + + # # - name: Create output directory + # # run: | + # # mkdir -p "$(dirname "hadolint-results-${{ matrix.dockerfile }}.sarif")" + + # - name: Run Hadolint + # uses: hadolint/hadolint-action@v3.1.0 + # with: + # dockerfile: ${{ matrix.dockerfile }} + # format: sarif + # output-file: hadolint-results-${{ matrix.dockerfile }}.sarif + # no-fail: true + # ignore: DL3008,DL3013 + + # - name: Upload hadolint results to github security tab + # uses: github/codeql-action/upload-sarif@v3 + # if: always() + # with: + # sarif_file: hadolint-results-${{ matrix.dockerfile }}.sarif + # wait-for-processing: true + + hadolint: + name: Dockerfile Lint + runs-on: ubuntu-latest + permissions: + actions: read + contents: read + security-events: write + strategy: + matrix: + dockerfile: + - jupyterhub/hub/hub.Dockerfile + - jupyterhub/notebook/notebook.Dockerfile + steps: + - name: Checkout code + uses: actions/checkout@v4 + + - name: Sanitize Dockerfile name + id: sanitize_name + run: | + IMAGE_NAME="$(basename '${{ matrix.dockerfile }}' | sed 's/.Dockerfile//'):${{github.sha}}" + echo "safe_name=$IMAGE_NAME" >> $GITHUB_OUTPUT + + - name: Run Hadolint + uses: hadolint/hadolint-action@v3.1.0 + with: + dockerfile: ${{ matrix.dockerfile }} + format: sarif + output-file: hadolint-results-${{ steps.sanitize_name.outputs.safe_name }}.sarif + no-fail: true + ignore: DL3008,DL3013 + + - name: Upload hadolint results to GitHub Security tab + uses: github/codeql-action/upload-sarif@v3 + if: always() + with: + sarif_file: hadolint-results-${{ steps.sanitize_name.outputs.safe_name }}.sarif + wait-for-processing: true + + # lint: + # name: Lint + # runs-on: ubuntu-latest + # steps: + # - name: Check out repository + # uses: actions/checkout@v4 + + # - name: Set up environment + # uses: ./.github/actions/setup/poetry + # with: + # os: ${{ job.os }} + # python-version: '3.13.0' + # poetry-install-options: "--only=code_quality --no-root" + # poetry-export-options: "--only=code_quality" + + # - name: Check code quality + # run: poetry run ruff check . + + # spell-check: + # name: Spell check + # runs-on: ubuntu-latest + # steps: + # - name: Check out repository + # uses: actions/checkout@v4 + + # - name: Set up environment + # uses: ./.github/actions/setup/poetry + # with: + # os: ${{ job.os }} + # python-version: '3.13.0' + # poetry-install-options: "--only=code_quality --no-root" + # poetry-export-options: "--only=code_quality" + + # - name: Check spellings + # run: poetry run typos . + + # type-check: + # name: Type check + # runs-on: ubuntu-latest + # steps: + # - name: Check out repository + # uses: actions/checkout@v4 + + # - name: Set up environment + # uses: ./.github/actions/setup/poetry + # with: + # os: ${{ job.os }} + # python-version: '3.13.0' + # poetry-install-options: "--with=code_quality --with=types --no-root" + # poetry-export-options: "--with=code_quality --with=types" + + # - name: Check types + # run: poetry run mypy jupyterhub/ +... diff --git a/.github/workflows/code_test.yaml b/.github/workflows/code_test.yaml new file mode 100644 index 0000000..39c07ba --- /dev/null +++ b/.github/workflows/code_test.yaml @@ -0,0 +1,64 @@ +# --- +# name: Code test + +# on: +# push: +# branches: +# - main +# pull_request: +# branches: +# - main +# schedule: +# - cron: '0 12 * * 1' # Runs every Monday at 12:00 PM UTC + +# jobs: +# integration-test: +# name: Integration test +# runs-on: ubuntu-latest +# steps: +# - name: Check out repository +# uses: actions/checkout@v4 + +# - name: Harden-Runner +# uses: step-security/harden-runner@v2.10.2 + +# - name: Set up environment +# uses: ./.github/actions/setup/poetry +# with: +# os: ${{ job.os }} +# python-version: '3.13.0' +# poetry-install-options: "--with=test" +# poetry-export-options: "--with=test" + +# - name: Run tests and generate coverage as test_integration.xml +# run: | +# poetry run pytest \ +# --cov-report term \ +# --cov-report xml:test_integration.xml \ +# --cov=tests/test_integration + +# unit-test: +# name: Unit test +# runs-on: ubuntu-latest +# steps: +# - name: Check out repository +# uses: actions/checkout@v4 + +# - name: Harden-Runner +# uses: step-security/harden-runner@v2.10.2 + +# - name: Set up environment +# uses: ./.github/actions/setup/poetry +# with: +# os: ${{ job.os }} +# python-version: '3.13.0' +# poetry-install-options: "--with=test" +# poetry-export-options: "--with=test" + +# - name: Run tests and generate coverage as test_unit.xml +# run: | +# poetry run pytest \ +# --cov-report term \ +# --cov-report xml:test_unit.xml \ +# --cov=tests/test_unit +# ... diff --git a/.github/workflows/pr_validation.yaml b/.github/workflows/pr_validation.yaml new file mode 100644 index 0000000..188d53f --- /dev/null +++ b/.github/workflows/pr_validation.yaml @@ -0,0 +1,83 @@ +# --- +# name: PR evaluation + +# on: +# pull_request: +# types: [opened, synchronize, reopened, ready_for_review, edited] +# branches: ['main'] + +# jobs: +# detect-unresolved-conflicts: +# name: Detect unresolved merge conflicts +# runs-on: ubuntu-latest +# if: github.event.action != 'edited' +# steps: +# - uses: actions/checkout@v3 +# - name: List files with merge conflict markers +# run: git --no-pager grep "<<<<<<<" ":(exclude).github/" || true +# - name: Fail or succeed job if any files with merge conflict markers +# run: exit $(git grep "<<<<<<<" ":(exclude).github/" | wc --lines) + +# pre-commit: +# name: Pre-commit checks +# runs-on: ubuntu-latest +# if: github.event.action != 'edited' +# steps: +# - name: Check out repository +# uses: actions/checkout@v4 + +# - name: Harden-Runner +# uses: step-security/harden-runner@v2.10.2 + +# - name: Set up environment +# uses: ./.github/actions/setup/poetry +# with: +# os: ${{ job.os }} +# python-version: '3.13.0' +# poetry-install-options: "--only=misc --no-root" +# poetry-export-options: "--only=misc" + +# - name: Check all the pre-commit hooks passed +# run: pre-commit run --all-files + +# semantic-pr: +# name: Semantic PR title +# runs-on: ubuntu-latest +# # yamllint disable rule:line-length +# if: > +# contains(['opened', 'reopened', 'ready_for_review'], github.event.action) || +# (github.event.action == 'edited' && github.event.changes.title != null) +# # yamllint enable rule:line-length +# steps: +# - name: Check if the PR title is semantic +# uses: amannn/action-semantic-pull-request@v5 +# env: +# GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} +# with: +# types: | +# fix +# feat +# docs +# style +# refactor +# perf +# test +# build +# ci +# chore +# revert +# subjectPattern: ^(?![A-Z])(?=.{1,50}$).+$ +# subjectPatternError: | +# The subject "{subject}" found in the pull request title "{title}" +# didn't match the configured pattern. Please ensure that the subject +# doesn't start with an uppercase character & not have more than 50 +# characters. + +# - name: Check length of PR title +# run: | +# PR_TITLE="${{ github.event.pull_request.title }}" +# if [ ${#PR_TITLE} -gt 50 ]; then +# echo "The PR title is too long. Please keep it under 50 characters." +# exit 1 +# fi +# ... diff --git a/.github/workflows/release_docker.yaml b/.github/workflows/release_docker.yaml new file mode 100644 index 0000000..1334596 --- /dev/null +++ b/.github/workflows/release_docker.yaml @@ -0,0 +1,95 @@ +--- +name: Docker Publish + +env: + DOCKER_ORG: elixircloud + REGISTRY: docker.io + PLATFORM: linux/amd64,linux/arm64 + +on: + push: + tags: + - 'hub-v*' + - 'notebook-v*' + +jobs: + docker: + runs-on: ubuntu-latest + permissions: + contents: read + packages: write + + steps: + - name: Checkout code + uses: actions/checkout@v4 + + - name: Set image type + id: image + run: | + if [[ ${{ github.ref_name }} == hub-v* ]]; then + echo "type=hub" >> $GITHUB_OUTPUT + echo "type_display=Hub" >> $GITHUB_OUTPUT + else + echo "type=notebook" >> $GITHUB_OUTPUT + echo "type_display=Notebook" >> $GITHUB_OUTPUT + fi + + - name: Set up Docker Buildx + uses: docker/setup-buildx-action@v3 + + - name: Login to Docker Hub + uses: docker/login-action@v3 + with: + registry: ${{ env.REGISTRY }} + username: ${{ secrets.DOCKERHUB_USERNAME }} + password: ${{ secrets.DOCKERHUB_TOKEN }} + + - name: Extract Docker metadata + id: meta + uses: docker/metadata-action@v5 + env: + TAG: ${{ github.ref_name }} + with: + images: ${{ env.REGISTRY }}/${{ env.DOCKER_ORG }}/jupyterhub-${{ steps.image.outputs.type }} + tags: | + type=raw,value=latest + type=raw,value=${{ github.ref_name }} + type=semver,pattern={{version}},value=${{ github.ref_name }} + labels: | + org.opencontainers.image.title=JupyterHub ${{ steps.image.outputs.type_display }} Image + org.opencontainers.image.description=Custom ${{ steps.image.outputs.type_display }} image for JupyterHub deployment + org.opencontainers.image.vendor=${{ env.DOCKER_ORG }} + org.opencontainers.image.version=${{ github.ref_name }} + org.opencontainers.image.created={{date 'yyyy-MM-dd'}} + org.opencontainers.image.revision=${{ github.sha }} + org.opencontainers.image.url=${{ github.event.repository.html_url }} + org.opencontainers.image.documentation=${{ github.event.repository.html_url }}/blob/main/jupyterhub/${{ steps.image.outputs.type }}/README.md + org.opencontainers.image.source=${{ github.event.repository.clone_url }} + + - name: Set build context + id: context + run: echo "dockerfile=jupyterhub/${{ steps.image.outputs.type }}/${{ steps.image.outputs.type }}.Dockerfile" >> $GITHUB_OUTPUT + + - name: Build and push Docker image + uses: docker/build-push-action@v5 + with: + context: . + file: ${{ steps.context.outputs.dockerfile }} + platforms: ${{ env.PLATFORM }} + push: true + tags: ${{ steps.meta.outputs.tags }} + labels: ${{ steps.meta.outputs.labels }} + cache-from: type=gha + cache-to: type=gha,mode=max + provenance: false + + - name: Create GitHub Release + uses: softprops/action-gh-release@v2 + with: + files: | + CHANGELOG.${{ steps.image.outputs.type }}.md + body_path: CHANGELOG.${{ steps.image.outputs.type }}.md + generate_release_notes: true + env: + GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} +... diff --git a/.github/workflows/vulnerability.yaml b/.github/workflows/vulnerability.yaml new file mode 100644 index 0000000..9a9fa61 --- /dev/null +++ b/.github/workflows/vulnerability.yaml @@ -0,0 +1,102 @@ +--- +name: Vulnerability test + +on: + push: + branches: + - main + pull_request: + branches: + - main + schedule: + - cron: '0 12 * * 1' # Runs every Monday at 12:00 PM UTC + +jobs: + # code-vulnerabilities: + # name: Code + # runs-on: ubuntu-latest + # steps: + # - name: Check out repository + # uses: actions/checkout@v4 + + # - name: Harden-Runner + # uses: step-security/harden-runner@v2.10.2 + + # - name: Set up environment + # uses: ./.github/actions/setup/poetry + # with: + # os: ${{ job.os }} + # python-version: '3.13.0' + # poetry-install-options: "--only=vulnerability --no-root" + # poetry-export-options: "--only=vulnerability" + + # - name: Check code vulnerabilities with bandit + # run: poetry run bandit -c pyproject.toml -r jupyterhub/ + + # dependency-vulnerabilities: + # name: Dependencies + # runs-on: ubuntu-latest + # steps: + # - name: Check out repository + # uses: actions/checkout@v4 + + # - name: Harden-Runner + # uses: step-security/harden-runner@v2.10.2 + + # - name: Set up environment + # uses: ./.github/actions/setup/poetry + # with: + # os: ${{ job.os }} + # python-version: '3.13.0' + # poetry-install-options: "--only=vulnerability --no-root" + # poetry-export-options: "--only=vulnerability" + + # - name: Check dependency vulnerabilities with safety + # run: poetry run safety check --full-report + + trivy: + name: Container Scan + runs-on: ubuntu-latest + permissions: + actions: read + contents: read + security-events: write + strategy: + matrix: + dockerfile: + - jupyterhub/hub/hub.Dockerfile + - jupyterhub/notebook/notebook.Dockerfile + steps: + - name: Checkout code + uses: actions/checkout@v4 + + # - name: Harden-Runner + # uses: step-security/harden-runner@v2.10.2 + + - name: Set image name + # yamllint disable rule:line-length + run: | + IMAGE_NAME="$(basename '${{ matrix.dockerfile }}' | sed 's/.Dockerfile//'):${{github.sha}}" + echo "IMAGE_NAME=$IMAGE_NAME" >> $GITHUB_ENV + # yamllint enable rule:line-length + + - name: Build Docker image + run: docker build -t ${{env.IMAGE_NAME}} -f ${{ matrix.dockerfile }} . + + - name: Run Trivy vulnerability scanner + uses: aquasecurity/trivy-action@0.28.0 + with: + image-ref: ${{ env.IMAGE_NAME }} + format: 'sarif' + output: 'trivy-results-${{ env.IMAGE_NAME }}.sarif' + severity: 'CRITICAL,HIGH' + timeout: '10m' + ignore-unfixed: true + + - name: Upload Trivy scan results + uses: github/codeql-action/upload-sarif@v3 + if: always() + with: + sarif_file: 'trivy-results-${{ env.IMAGE_NAME }}.sarif' + category: 'trivy-${{ env.IMAGE_NAME }}' +... diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..68c8d04 --- /dev/null +++ b/.gitignore @@ -0,0 +1,182 @@ +######### User-defined project-specific ignore patterns. ######### +######### Add your custom ignore patterns HERE. ######### + +######### End of user-defined project-specific ignore patterns. ######### + +######## This section contains auto-generated ignore patterns for ######### +######## Python projects. ######### + +# Created by https://www.toptal.com/developers/gitignore/api/python +# Edit at https://www.toptal.com/developers/gitignore?templates=python + +### Python ### +# Byte-compiled / optimized / DLL files +__pycache__/ +*.py[cod] +*$py.class + +# C extensions +*.so + +# Distribution / packaging +.Python +build/ +develop-eggs/ +dist/ +downloads/ +eggs/ +.eggs/ +lib/ +lib64/ +parts/ +sdist/ +var/ +wheels/ +share/python-wheels/ +*.egg-info/ +.installed.cfg +*.egg +MANIFEST + +# PyInstaller +# Usually these files are written by a python script from a template +# before PyInstaller builds the exe, so as to inject date/other infos into it. +*.manifest +*.spec + +# Installer logs +pip-log.txt +pip-delete-this-directory.txt + +# Unit test / coverage reports +htmlcov/ +.tox/ +.nox/ +.coverage +.coverage.* +.cache +nosetests.xml +coverage.xml +*.cover +*.py,cover +.hypothesis/ +.pytest_cache/ +cover/ + +# Translations +*.mo +*.pot + +# Django stuff: +*.log +local_settings.py +db.sqlite3 +db.sqlite3-journal + +# Flask stuff: +instance/ +.webassets-cache + +# Scrapy stuff: +.scrapy + +# Sphinx documentation +docs/build/ + +# PyBuilder +.pybuilder/ +target/ + +# Jupyter Notebook +.ipynb_checkpoints + +# IPython +profile_default/ +ipython_config.py + +# pyenv +# For a library or package, you might want to ignore these files since the code is +# intended to run in multiple environments; otherwise, check them in: +.python-version + +# pipenv +# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control. +# However, in case of collaboration, if having platform-specific dependencies or dependencies +# having no cross-platform support, pipenv may install dependencies that don't work, or not +# install all needed dependencies. +Pipfile.lock + +# pdm +# Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control. +#pdm.lock +# pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it +# in version control. +# https://pdm.fming.dev/#use-with-ide +.pdm.toml + +# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm +__pypackages__/ + +# Celery stuff +celerybeat-schedule +celerybeat.pid + +# SageMath parsed files +*.sage.py + +# Environments +**/.env +**/.envrc +.venv +env/ +venv/ +ENV/ +env.bak/ +venv.bak/ + +# Spyder project settings +.spyderproject +.spyproject + +# Rope project settings +.ropeproject + +# mkdocs documentation +/site + +# mypy +.mypy_cache/ +.dmypy.json +dmypy.json + +# Pyre type checker +.pyre/ + +# pytype static type analyzer +.pytype/ + +# Cython debug symbols +cython_debug/ + +# PyCharm +# JetBrains specific template is maintained in a separate JetBrains.gitignore that can +# be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore +# and can be added to the global gitignore or merged into this file. For a more nuclear +# option (not recommended) you can uncomment the following to ignore the entire idea folder. +.idea/ + +### Python Patch ### +# Poetry local configuration file - https://python-poetry.org/docs/configuration/#local-configuration +poetry.toml + +# ruff +.ruff_cache/ + +# LSP config files +pyrightconfig.json + +# End of https://www.toptal.com/developers/gitignore/api/python +SquareX Safe File Viewer +✕ + +######### End of auto-generated ignore patterns for Python projects. ######### diff --git a/.markdownlint.yaml b/.markdownlint.yaml new file mode 100644 index 0000000..d087d0e --- /dev/null +++ b/.markdownlint.yaml @@ -0,0 +1,77 @@ +--- +default: true + +# Headings +MD001: + level: 1 # Require headings to increment by one level at a time +MD002: + level: 2 # Require that the first heading in a document is a level 2 heading +MD003: + style: atx # Enforce a consistent style for headings (e.g., atx style) + +# Unordered Lists +MD004: + style: dash # Enforce consistent marker style (e.g., - for list items) +MD005: true # Ensure list indentation is consistent +MD006: true # Require proper indentation for list items +MD007: + indent: 2 # Enforce a consistent indentation level for nested list items + +# Line Length +MD013: + line_length: 80 # Limit line length to 80 characters + code_blocks: false # Exclude code blocks from line length rule + tables: false # Exclude tables from line length rule + +# Trailing Spaces +MD009: + strict: true # Ensure no trailing spaces at the end of lines + +# Punctuation +MD026: + punctuation: ".,;:!" # Ensure proper punctuation in headings + +# Horizontal Rules +MD035: + style: "***" # Enforce a consistent style for horizontal rules + +# Links and Images +MD042: true # Require proper use of URLs in links +MD045: true # Ensure alt text is provided for images + +# General Formatting +MD010: true # No hard tabs +MD012: + maximum: 1 # No multiple consecutive blank lines +MD014: true # Dollar signs used before commands without showing output +MD018: true # No space after hash on atx style heading +MD019: true # Multiple spaces after hash on atx style heading +MD020: true # No space inside hashes on closed atx style heading +MD021: true # No multiple spaces inside hashes on closed atx style heading +MD022: true # Headings should be surrounded by blank lines +MD023: true # Headings must start at the beginning of the line +MD024: true # Multiple headings with the same content +MD025: true # Multiple top-level headings in the same document +MD027: true # Multiple spaces after blockquote symbol +MD028: true # Blank line inside blockquote +MD029: true # Ordered list item prefix +MD030: true # Spaces after list markers +MD031: true # Fenced code blocks should be surrounded by blank lines +MD032: true # Lists should be surrounded by blank lines +MD033: # Inline HTML + allowed_elements: + - kbd + - img +MD034: true # Bare URL used +MD036: true # Emphasis used instead of a header +MD037: true # Spaces inside emphasis markers +MD038: true # Spaces inside code span elements +MD039: true # Spaces inside link elements +MD040: true # Fenced code blocks should have a language specified +MD041: false # First line need not be h1 +MD046: true # Code block style +MD047: true # Files should end with a single newline character +MD048: true # Code fence style +MD049: true # Required heading structure +MD050: true # Strong style should be consistent +... diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml new file mode 100644 index 0000000..4a7df21 --- /dev/null +++ b/.pre-commit-config.yaml @@ -0,0 +1,56 @@ +--- +# See https://pre-commit.com for more information +# See https://pre-commit.com/hooks.html for more hooks +# Common commands: +# pre-commit install +# pre-commit autoupdate +# pre-commit run --all-files --hook-stage commit +repos: + - repo: https://github.com/pre-commit/pre-commit-hooks + rev: v4.6.0 + hooks: + - id: check-added-large-files + - id: destroyed-symlinks + - id: detect-private-key + - id: end-of-file-fixer + - id: mixed-line-ending + args: [--fix=auto] + - id: trailing-whitespace + - repo: https://github.com/igorshubovych/markdownlint-cli + rev: v0.41.0 + hooks: + - id: markdownlint + args: ["--fix"] + exclude: | + (?x)^( + CHANGELOG.hub.md| + CHANGELOG.notebook.md + )$ + - repo: https://github.com/executablebooks/mdformat + rev: 0.7.17 + hooks: + - id: mdformat + additional_dependencies: + - mdformat-config + - mdformat-black + - mdformat-frontmatter + - mdformat-gfm + args: + - --wrap=80 + exclude: | + (?x)^( + PULL_REQUEST_TEMPLATE.md| + CHANGELOG.hub.md| + CHANGELOG.notebook.md + )$ + - repo: https://github.com/adrienverge/yamllint.git + rev: v1.35.1 + hooks: + - id: yamllint + - repo: https://github.com/pappasam/toml-sort + rev: v0.23.1 + hooks: + - id: toml-sort-fix + args: [--in-place, --all, --trailing-comma-inline-array] + exclude: poetry.lock +... diff --git a/.safety-policy.yml b/.safety-policy.yml new file mode 100644 index 0000000..b916591 --- /dev/null +++ b/.safety-policy.yml @@ -0,0 +1,40 @@ +--- +version: '3.0' + +scanning-settings: + max-depth: 6 + exclude: [] + include-files: [] + system: + targets: [] + +security: + ignore-vulnerabilities: + +report: + dependency-vulnerabilities: + enabled: true + auto-ignore-in-report: + python: + environment-results: true + unpinned-requirements: true + cvss-severity: [] + +fail-scan-with-exit-code: + dependency-vulnerabilities: + enabled: true + fail-on-any-of: + cvss-severity: + - critical + - high + - medium + exploitability: + - critical + - high + - medium + +security-updates: + dependency-vulnerabilities: + auto-security-updates-limit: + - patch +... diff --git a/.yamllint.yaml b/.yamllint.yaml new file mode 100644 index 0000000..ad3171a --- /dev/null +++ b/.yamllint.yaml @@ -0,0 +1,13 @@ +--- +# https://yamllint.readthedocs.io/en/stable/configuration.html#default-configuration +extends: default + +rules: + truthy: + ignore: + .github/**/*.yaml + document-start: + level: error + document-end: + level: error +... diff --git a/CHANGELOG.hub.md b/CHANGELOG.hub.md new file mode 100644 index 0000000..e69de29 diff --git a/CHANGELOG.notebook.md b/CHANGELOG.notebook.md new file mode 100644 index 0000000..e69de29 diff --git a/LICENSE b/LICENSE new file mode 100644 index 0000000..3fc78a6 --- /dev/null +++ b/LICENSE @@ -0,0 +1,45 @@ +CONFIDENTIAL AND PROPRIETARY + +Copyright (c) 2024 Pacific Analytics Consulting PTY LTD. All Rights Reserved. + +NOTICE: All information contained herein is, and remains the property of Pacific +Analytics Consulting Pty Ltd and its suppliers, if any. The intellectual and technical +concepts contained herein are proprietary to Pacific Analytics Consulting Pty +Ltd and its suppliers and may be covered by Australian Patents, International Patents, +patents in process, and are protected by trade secret law, copyright law, and +other intellectual property laws of Australia and other countries. + +Dissemination of this information or reproduction of this material is strictly +forbidden unless prior written permission is obtained from Pacific Analytics +Consulting Pty Ltd. Access to the source code contained herein is hereby +forbidden to anyone except current Pacific Analytics consulting Pty Ltd +employees, managers or contractors who have executed Confidentiality and +Non-disclosure agreements explicitly covering such access. + +The copyright notice above does not evidence any actual or intended publication +or disclosure of this source code, which includes information that is +confidential and/or proprietary, and is a trade secret, of Pacific Analytics +Pty Ltd. ANY REPRODUCTION, MODIFICATION, DISTRIBUTION, PUBLIC PERFORMANCE, OR +PUBLIC DISPLAY OF OR THROUGH USE OF THIS SOURCE CODE WITHOUT THE EXPRESS WRITTEN +CONSENT OF Pacific Analytics Consulting PTY LTD IS STRICTLY PROHIBITED, AND IN +VIOLATION OF APPLICABLE LAWS AND INTERNATIONAL TREATIES. THE RECEIPT OR +POSSESSION OF THIS SOURCE CODE AND/OR RELATED INFORMATION DOES NOT CONVEY OR +IMPLY ANY RIGHTS TO REPRODUCE, DISCLOSE OR DISTRIBUTE ITS CONTENTS, OR TO +MANUFACTURE, USE, OR SELL ANYTHING THAT IT MAY DESCRIBE, IN WHOLE OR IN PART. + +This software and any derivatives are provided on an "AS IS" basis, without +warranty of any kind, either expressed or implied, including, without limitation, +warranties that the software is free of defects, merchantable, fit for a +particular purpose or non-infringing. The entire risk as to the quality and +performance of the software is with the company. Should the software prove +defective in any respect, the company assumes the entire cost of any service and +repair. + +THE COMPANY SPECIFICALLY DISCLAIMS ANY WARRANTIES, INCLUDING, BUT NOT LIMITED TO, +THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. +THE SOFTWARE PROVIDED HEREUNDER IS ON AN "AS IS" BASIS, AND THE COMPANY HAS NO +OBLIGATIONS TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR MODIFICATIONS. + +This agreement shall be governed by and construed in accordance with the laws of +Australia. Any disputes arising under or in connection with this agreement shall +be subject to the exclusive jurisdiction of the courts of Australia. diff --git a/Makefile b/Makefile new file mode 100644 index 0000000..5b41768 --- /dev/null +++ b/Makefile @@ -0,0 +1,139 @@ +# NOTE: This Makefile assumes that dependencies are installed and, if a virtual +# environment is used, it is activated. + +## Variables ################################################################## +# NOTE: Define any variables here if needed in the future + +## Documentation ############################################################## +# NOTE: Keep all the targets in alphabetical order for better readability. + +default: help + +.PHONY: help +help: + @echo "\nUsage: make [target] ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++\n" + @echo "Available targets:\n" + + @echo "Code Quality ------------------------------------------------------------------" + @echo " \033[1m\033[35mformat-lint\033[0m \033[37m(fl)\033[0m: \033[36mRun linter, formatter, spellcheck.\033[0m" + @echo " \033[1m\033[35mprecommit-check\033[0m \033[37m(pc)\033[0m: \033[36mRun all pre-commit checks.\033[0m" + @echo " \033[1m\033[35msecurity\033[0m \033[37m(s)\033[0m: \033[36mRun security scans.\033[0m" + @echo " \033[1m\033[35mtype-check\033[0m \033[37m(tc)\033[0m: \033[36mPerform type checking.\033[0m\n" + + @echo "Deployment --------------------------------------------------------------------" + @echo " \033[1m\033[35mbuild-hub-image\033[0m \033[37m(bhi)\033[0m: \033[36mBuild the jupyterhub image.\033[0m" + @echo " \033[1m\033[35mbuild-notebook-image\033[0m \033[37m(bni)\033[0m: \033[36mBuild the notebook image.\033[0m" + @echo " \033[1m\033[35mclean-docker-image\033[0m \033[37m(cdi)\033[0m: \033[36mRemove the Docker image.\033[0m\n" + + @echo "Environment Management --------------------------------------------------------" + @echo " \033[1m\033[35masdf-install\033[0m \033[37m(asdfi)\033[0m: \033[36mTry to install tools listed in .tool-versions.\033[0m" + @echo " \033[1m\033[35mclean-venv\033[0m \033[37m(cv)\033[0m: \033[36mRemove virtual environment.\033[0m" + @echo " \033[1m\033[35minstall\033[0m \033[37m(i)\033[0m: \033[36mInstall app and dependencies.\033[0m" + @echo " \033[1m\033[35mvenv\033[0m \033[37m(v)\033[0m: \033[36mCreate virtual environment.\033[0m\n" + + @echo "Testing -----------------------------------------------------------------------" + @echo " \033[1m\033[35mtest\033[0m \033[37m(t)\033[0m: \033[36mRun all tests.\033[0m\n" + +## Autogenerated Targets ###################################################### +# NOTE: Keep all the targets in alphabetical order for better readability. +# NOTE: Do not modify the autogenerated targets, unless necessary, write custom +# targets in the custom section below.. + +.PHONY: asdf-install asdfi +asdf-install: + @echo "\nInstalling ASDF Plugins & Tools +++++++++++++++++++++++++++++++++++++++++++++++\n" + @cat .tool-versions | cut -d' ' -f1 | grep "^[^\#]" | xargs -I {} asdf plugin add {} + @asdf install + +asdfi: asdf-install + +.PHONY: build-hub-image bhi +build-hub-image: + @echo "\nBuilding Docker image +++++++++++++++++++++++++++++++++++++++++++++++++++++++++\n" + @docker build -t elixircloud/jupyterhub:latest -f jupyterhub/hub/hub.Dockerfile . + @echo "\nDocker image built successfully: elixircloud/jupyterhub:latest\n" + +bhi: build-hub-image + +.PHONY: build-notebook-image bni +build-notebook-image: + @echo "\nBuilding Docker image +++++++++++++++++++++++++++++++++++++++++++++++++++++++++\n" + @docker build -t elixircloud/notebook:latest -f jupyterhub/notebook/notebook.Dockerfile . + @echo "\nDocker image built successfully: elixircloud/notebook:latest\n" + +bni: build-notebook-image + +.PHONY: clean-docker-image cdi +clean-docker-image: + @echo "\nRemoving Docker image +++++++++++++++++++++++++++++++++++++++++++++++++++++++++\n" + @docker rmi elixircloud/jupyterhub:latest:latest || echo "Jupyterhub image not found." + @docker rmi elixircloud/notebook:latest:latest || echo "Notebook image not found." + @echo "\nDocker image removed successfully (if it existed).\n" + +cdi: clean-docker-image + +.PHONY: clean-venv cv +clean-venv: + @echo "\nRemoving the virtual environment ++++++++++++++++++++++++++++++++++++++++++++++\n" + @rm -rf .venv + +cv: clean-venv + +.PHONY: format-lint fl +format-lint: + @echo "\nRunning linter and formatter using ruff and typos +++++++++++++++++++++++++++++\n" + @poetry run ruff format && poetry run ruff check --fix + @typos . + +fl: format-lint + +.PHONY: install i +install: + @echo "\nInstalling this package its dependencies +++++++++++++++++++++++++++++++++\n" + @poetry install --with=code_quality,misc,test,types,vulnerability --no-root + +i: install + +.PHONY: precommit-check pc +precommit-check: + @echo "\nRunning pre-commit checks +++++++++++++++++++++++++++++++++++++++++++++++++++++\n" + @poetry run pre-commit run --all-files + +pc: precommit-check + +.PHONY: security s +security: + @echo "\nRunning security scans using bandit and safety ++++++++++++++++++++++++++++++++\n" + @poetry run safety check --full-report + @poetry run bandit -c pyproject.toml -r jupyterhub + +s: security + +.PHONY: test t +test: + @echo "\nRunning tests using pytest ++++++++++++++++++++++++++++++++++++++++++++++++++++\n" + @poetry run pytest tests/ + +t: test + +.PHONY: type-check tc +type-check: + @echo "\nPerforming type checking with mypy ++++++++++++++++++++++++++++++++++++++++++++\n" + @poetry run mypy jupyterhub + +tc: type-check + +.PHONY: venv v +venv: + @echo "\nCreating a virtual environment ++++++++++++++++++++++++++++++++++++++++++++++++\n" + @python -m venv .venv + @echo "\nSummary +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++\n" + @echo "Virtual environment created successfully." + @echo "To activate the environment for this shell session, run:" + @echo "source .venv/bin/activate" + +v: venv + +## Custom Targets ############################################################# +# NOTE: Keep all the targets in alphabetical order for better readability. +# NOTE: Add any custom targets here if needed in the future. diff --git a/PULL_REQUEST_TEMPLATE.md b/PULL_REQUEST_TEMPLATE.md new file mode 100644 index 0000000..aa9c462 --- /dev/null +++ b/PULL_REQUEST_TEMPLATE.md @@ -0,0 +1,61 @@ +#### Description + + + +- Fixes #(issue number) + + + +#### Checklist + + + +- [] I acknowledge that all my commits will be squashed into a single commit + using the PR title as the commit message +- [] I have performed a self-review of my own code +- [] I have updated any relevant user- developer- and or administrator-facing + documentation to describe any new or changed behavior +- [] I have added or updated docstrings in the style adopted by the project for + all relevant packages/modules/functions/classes/methods or updated existing ones +- [] I have added type annotations for all function/class/method interfaces or + updated existing ones +- [] I have added tests that prove my fix is effective or that my feature + works +- [] I have not reduced the existing code coverage +- [] **I have ticked off all items in this checklist because leaving any unchecked + boxes means the PR is not ready for review** + +#### Comments + + diff --git a/README.md b/README.md index 2b25087..7750165 100644 --- a/README.md +++ b/README.md @@ -1 +1,267 @@ -# test-sec-ci +[![Bandit](https://img.shields.io/badge/security-bandit-yellow.svg)](https://bandit.readthedocs.io/en/latest/) +[![Docker Build and Release](https://github.com/elixircloud/jupyterhub/actions/workflows/release_docker.yaml/badge.svg)](https://github.com/elixircloud/jupyterhub/actions/workflows/release_docker.yaml) +[![License](https://img.shields.io/github/license/elixircloud/jupyterhub)](LICENSE) +[![Latest Release](https://img.shields.io/github/v/release/elixircloud/jupyterhub)](https://github.com/elixircloud/jupyterhub/releases) +[![Python 3.13.0](https://img.shields.io/badge/python-3.13.0-blue.svg)](https://www.python.org/) +[![Ruff](https://img.shields.io/badge/linter%20&%20formatter-ruff-000000.svg)](https://docs.astral.sh/ruff/) +[![Safety](https://img.shields.io/badge/security-safety-orange.svg)](https://safetycli.com/product/safety-cli) + +# Jupyterhub + +All configurations, images, and scripts for the `Jupyterhub` deployment. + +## Table of Contents + +- [Basic Usage](#basic-usage) +- [Installation](#installation) +- [Development](#development) + - [Makefile](#makefile) + - [Environment reproducibility](#environment-reproducibility) + - [asdf](#asdf) + - [Dev containers](#dev-containers) + - [Editor config](#editor-config) + - [Setting environment variables (direnv)](#setting-environment-variables-direnv) +- [Releases and versioning](#releases-and-versioning) +- [License](#license) + +## Basic Usage + +## Installation + +## Development + +### Makefile + +For ease of use, certain scripts have been abbreviated in `Makefile`, make sure +that you have installed the dependencies before running the commands. + +> **Note**: `make` commands are only available for `Unix-based` systems or +> inside `Dev container`. + +To view the commands available, run: + +```sh +make +``` + +Here are certain commands that you might find useful: + +- Make a virtual environment + +```sh +make v +``` + +- Install all dependencies including optional dependencies + +```sh +make i +``` + +> **Note**: This project uses optional dependency groups such as `types`, +> `code_quality`, `vulnerability`, `test`, and `misc`. To install stubs or types +> for the dependencies, you **must** use the following command: +> +> ```sh +> poetry add types-foo --group types +> ``` +> +> Replace `types-foo` with the name of the package for the types. All runtime +> dependencies should be added to the `default` group. For example, to install +> `requests` and its type stubs, run: +> +> ```sh +> poetry add requests +> poetry add types-requests --group types +> ``` +> +> This ensures that the type checker functions correctly. +> +> **Note**: Since the dependencies are segregated into groups, if you add a new +> group make sure to add it in `make install` command in [Makefile](Makefile). + +- Run tests + +```sh +make t +``` + +- Run linter, formatter and spell checker + +```sh +make fl +``` + +- Build the documentation + +```sh +make d +``` + +> **Note**: If you make changes to the code, make sure to generate and push the +> documentation using above command, else the documentation check CI will fail. +> Do NOT edit auto-generated documentation manually. + +- Run type checker + +```sh +make tc +``` + +- Run all pre-commit checks + +```sh +make pc +``` + +- Update the cookiecutter template + +```sh +make u +``` + +> **Note**: This is not the complete list of commands, run `make` to find out if +> more have been added. + +### Environment reproducibility + +Below mentioned are some tools and configuration that you can use to make your +environment development-ready. This is optional and opinionated but can help you +set up your environment quickly. + +#### asdf + +We recommend using [asdf] to manage your development environment efficiently. +This tool allows you to handle multiple language versions and tools seamlessly. +You can install asdf by following the +[official installation guide][asdf-install]. If you are working within +[dev containers](#dev-containers), asdf will come pre-installed. The project +includes a `.tool-versions` file, which lists the specific versions of tools +used. This ensures consistency across environments. To streamline the +installation process, use the following command to install the required tools +defined in the `.tool-versions` file: + +```sh +make asdfi +``` + +> **Note:** The `make asdfi` command might not install every tool listed in the +> `.tool-versions` file. After running the command, verify that all necessary +> tools are installed. If any tools are missing, install them manually using +> asdf. + +Example manual installation command: + +```sh +asdf install +``` + +#### Dev Containers + +Our project supports [Dev Containers][devcontainers] for an easy and +reproducible setup of development environments via containers. To make use of +it, install the Dev Containers extension in one of the supported editors/IDEs. + +For example, for VS Code, do the following to have Dev Containers provision a +container-based development environment for you: + +- Make sure [Docker is installed][docker-install] on your machine. +- To install the official Microsoft extension, open the Extensions view + (Ctrl + Shift + x), enter + `ms-vscode-remote.remote-containers` in the query box, press Enter, + select the "Dev Containers" extension and hit the "Install" button; + alternatively, use [this direct link][devcontainers-download] +- After reloading VS Code and opening the project folder, you should be prompted + by the Dev Containers extension to open the workspace in a container. If not, + press Ctrl + Shift + g to open the command + panel, search for "Dev Containers: Open Workspace in Container..." and hit + Enter + +The development environment will now be installed and activated. + +> **Note:** The initial process will take some time, as multiple container +> images need to be pulled and dependencies installed. However, once set up, +> activating the environment is fast. + +#### Editor Config + +To ensure a consistent code style across the project, we include an +`.editorconfig` file that defines the coding styles for different editors and +IDEs. Most modern editors support this file format out of the box, but you might +need to install a plugin for some editors. Please refer to the +[EditorConfig website][editor-config]. + +#### Setting environment variables (direnv) + +Our project uses [.envrc files][direnv] to manage environment variables. +Wherever such a file is required across the project tree, you will find a +`.envrc.template` file that contains the necessary variables and helps you +create your own personal copy of each file. You can find the locations of all +`.envrc.template` files by executing `find . -type f -name \.envrc\.template` in +the root directory. For each, create a copy named `.envrc` in the same +directory, open it in a text editor and replace the template/example values with +your own personal and potentially confidential values. + +**Warning:** Be careful not to leak sensitive information! In particular, +**never** add your secrets to the `.envrc.template` files directly, as these are +committed to version control and will be visible to anyone with access to the +repository. Always create an `.envrc` copy first (capitalization and punctuation +matter!), as these (along with `.env` files) are ignored from version control. + +Once you have filled in all of your personal information, you can have the +`direnv` tool manage setting your environment variables automatically (depending +on the directory you are currently in and the particular `.envrc` file defined +for that directory) by executing the following command: + +```sh +direnv allow +``` + +> **Note**: Make sure you have `direnv` installed on your system. Follow the +> instructions on the [official website][direnv] to install it. If you are using +> [Dev Containers](#dev-containers), your development environment will have +> `direnv` available and ready to use. + +## Releases and versioning + +This repository manages two Docker images for JupyterHub deployment: the `hub` +(jupyterhub/hub/hub.Dockerfile) and `notebook` +(jupyterhub/notebook/notebook.Dockerfile) images. Each image has its own version +file and changelog (CHANGELOG.hub.md and CHANGELOG.notebook.md), following +[semantic versioning][semver] (MAJOR.MINOR.PATCH). + +To create a release, use the provided `manage_release.py` script: + +```bash +python manage_release.py [hub|notebook] --bump [patch|minor|major] --changes "changelog message" +``` + +Example: + +```bash +python manage_release.py hub --bump minor --changes "#### Added +- New authentication plugin support +- Updated base image to Ubuntu 22.04 + +#### Fixed +- Permission issues in home directory" +``` + +The script will bump the version, update the changelog and create a git tag. On +pushing the tag to Github a workflow will be triggered that builds +multi-architecture images (amd64, arm64), pushes them to Docker Hub and creates +a GitHub release with the changelog. + +> **Note**: Administrators need to configure Docker Hub credentials +> (DOCKERHUB_USERNAME and DOCKERHUB_TOKEN) in the repository secrets. + +## License + +[asdf]: https://asdf-vm.com/ +[asdf-install]: https://asdf-vm.com/guide/getting-started.html +[devcontainers]: https://code.visualstudio.com/docs/devcontainers/containers +[devcontainers-download]: https://marketplace.visualstudio.com/items?itemName=ms-vscode-remote.remote-containers +[direnv]: https://direnv.net/ +[docker-install]: https://docs.docker.com/engine/install/ +[editor-config]: https://editorconfig.org/ +[semver]: https://semver.org/ diff --git a/jupyterhub/__init__.py b/jupyterhub/__init__.py new file mode 100644 index 0000000..2253579 --- /dev/null +++ b/jupyterhub/__init__.py @@ -0,0 +1,4 @@ +"""Dummy init. + +Helps passing dummy test in CI. +""" diff --git a/jupyterhub/hub/README.md b/jupyterhub/hub/README.md new file mode 100644 index 0000000..e69de29 diff --git a/jupyterhub/hub/VERSION b/jupyterhub/hub/VERSION new file mode 100644 index 0000000..77d6f4c --- /dev/null +++ b/jupyterhub/hub/VERSION @@ -0,0 +1 @@ +0.0.0 diff --git a/jupyterhub/hub/hub.Dockerfile b/jupyterhub/hub/hub.Dockerfile new file mode 100644 index 0000000..f4115a5 --- /dev/null +++ b/jupyterhub/hub/hub.Dockerfile @@ -0,0 +1,11 @@ +FROM quay.io/jupyterhub/jupyterhub:5.2.1 + +ENV TINI_VERSION=v0.19.0 +ADD https://github.com/krallin/tini/releases/download/${TINI_VERSION}/tini /tini +RUN chmod +x /tini + +WORKDIR /srv/jupyterhub + +ENTRYPOINT ["/tini", "--"] + +CMD ["jupyterhub"] diff --git a/jupyterhub/notebook/README.md b/jupyterhub/notebook/README.md new file mode 100644 index 0000000..e69de29 diff --git a/jupyterhub/notebook/VERSION b/jupyterhub/notebook/VERSION new file mode 100644 index 0000000..77d6f4c --- /dev/null +++ b/jupyterhub/notebook/VERSION @@ -0,0 +1 @@ +0.0.0 diff --git a/jupyterhub/notebook/notebook.Dockerfile b/jupyterhub/notebook/notebook.Dockerfile new file mode 100644 index 0000000..82b3852 --- /dev/null +++ b/jupyterhub/notebook/notebook.Dockerfile @@ -0,0 +1,16 @@ +FROM quay.io/jupyter/datascience-notebook:2024-12-23 + +USER root +RUN apt-get update && apt-get install -y curl \ + && rm -rf /var/lib/apt/lists/* + +ENV TINI_VERSION=v0.19.0 +RUN curl -L https://github.com/krallin/tini/releases/download/${TINI_VERSION}/tini -o /tini \ + && chown root:root /tini \ + && chmod +x /tini + +WORKDIR /srv/jupyterhub + +ENTRYPOINT ["/tini", "--"] + +CMD ["start-notebook.py"] diff --git a/manage_release.py b/manage_release.py new file mode 100644 index 0000000..07565e2 --- /dev/null +++ b/manage_release.py @@ -0,0 +1,140 @@ +"""Create changelog and manage releases.""" + +import argparse +import subprocess +from datetime import datetime +from pathlib import Path + + +class DockerImageRelease: + """Class to bump image version. + + Arguments: + image_type: Image to release, jupyterhub or notebook. + + Attributes: + image_type: Image to release, jupyterhub or notebook. + version_file: Path of the version file for the image. + changelog_file: Path of the changelog file. + """ + + def __init__(self, image_type: str): + """Class init.""" + self.image_type = image_type + self.version_file = Path(f"jupyterhub/{image_type}/VERSION") + self.changelog_file = Path(f"CHANGELOG.{image_type}.md") + + def get_current_version(self) -> str: + """Get the current version of the images. + + Read the version mentioned in the `VERSION` file + of the selected image and return. + + Returns: + str: Version of the image. + """ + if self.version_file.exists(): + return self.version_file.read_text().strip() + return "0.0.0" + + def bump_version(self, bump_type="patch"): + """Bump the version of the image. + + Arguments: + bump_type: `patch`, `minor` or `major`. + """ + current = self.get_current_version() + major, minor, patch = map(int, current.split(".")) + + if bump_type == "major": + major += 1 + minor = patch = 0 + elif bump_type == "minor": + minor += 1 + patch = 0 + else: + patch += 1 + + new_version = f"{major}.{minor}.{patch}" + self.version_file.write_text(new_version) + return new_version + + def update_changelog(self, version, changes): + """Updates the change log. + + Arguments: + version: New version image is getting updated to. + changes: Message to add to changelog. + """ + today = datetime.now().strftime("%Y-%m-%d") + new_entry = f""" +## [{version}] - {today} + +### {self.image_type.capitalize()} Image +{changes} +""" + current_changelog = ( + self.changelog_file.read_text() + if self.changelog_file.exists() + else "# Changelog\n" + ) + unreleased_pos = current_changelog.find("## [Unreleased]") + + if unreleased_pos == -1: + updated_changelog = current_changelog + new_entry + else: + updated_changelog = ( + current_changelog[:unreleased_pos] + + "## [Unreleased]\n\n" + + new_entry + + current_changelog[unreleased_pos:].split("## [")[1:] + ) # type: ignore + + self.changelog_file.write_text(updated_changelog) + + def create_git_tag(self, version): + """Create a git tag for the image with version.""" + tag = f"{self.image_type}-v{version}" + subprocess.run(["git", "tag", tag], check=False) + subprocess.run(["git", "push", "origin", tag], check=False) + + +def main(): + """Entry point.""" + parser = argparse.ArgumentParser(description="Manage Docker image releases") + parser.add_argument( + "image_type", choices=["hub", "notebook"], help="Type of image to release" + ) + parser.add_argument( + "--bump", + choices=["major", "minor", "patch"], + default="patch", + help="Version bump type", + ) + parser.add_argument("--changes", type=str, help="Changelog entry content") + + args = parser.parse_args() + + release = DockerImageRelease(args.image_type) + new_version = release.bump_version(args.bump) + + if args.changes: + 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+line-ending = "lf" +quote-style = "double" + +[tool.ruff.lint] +select = [ + "B", # flake8-bugbear + "C90", # mccabe + "D", # pydocstyle + "E", # pycodestyle + "F", # Pyflakes + "I", # isort + "PL", # pylint + "SIM", # flake8-simplify + "UP", # pyupgrade +] + +[tool.ruff.lint.pydocstyle] +convention = "google" diff --git a/tests/__init__.py b/tests/__init__.py new file mode 100644 index 0000000..f1365f8 --- /dev/null +++ b/tests/__init__.py @@ -0,0 +1 @@ +"""This package contains tests.""" diff --git a/tests/test_integration/__init__.py b/tests/test_integration/__init__.py new file mode 100644 index 0000000..9a74cfd --- /dev/null +++ b/tests/test_integration/__init__.py @@ -0,0 +1 @@ +"""This package contains integration tests.""" diff --git a/tests/test_integration/test_init.py b/tests/test_integration/test_init.py new file mode 100644 index 0000000..c51b07d --- /dev/null +++ b/tests/test_integration/test_init.py @@ -0,0 +1,9 @@ +"""Integration tests for the __init__.py file.""" + +from pathlib import Path + + +def test_init_file_exists(): + """Check if the __init__.py file exists.""" + path_to_init_file = Path(__file__).parents[2] / "jupyterhub" / "__init__.py" + assert path_to_init_file.exists(), f"File {path_to_init_file} does not exist." diff --git a/tests/test_unit/__init__.py b/tests/test_unit/__init__.py new file mode 100644 index 0000000..2f312a6 --- /dev/null +++ b/tests/test_unit/__init__.py @@ -0,0 +1 @@ +"""This package contains unit tests.""" diff --git a/tests/test_unit/test_init.py b/tests/test_unit/test_init.py new file mode 100644 index 0000000..1c51f41 --- /dev/null +++ b/tests/test_unit/test_init.py @@ -0,0 +1,9 @@ +"""Unit tests for the __init__.py file.""" + +from pathlib import Path + + +def test_init_file_exists(): + """Check if the __init__.py file exists.""" + path_to_init_file = Path(__file__).parents[2] / "jupyterhub" / "__init__.py" + assert path_to_init_file.exists(), f"File {path_to_init_file} does not exist."