py-forestly/.github/workflows/quarto-publish.yml at 96e387d3bfc822e1d9e122bf2d73e1984129b9fe · elong0527/py-forestly · GitHub

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name: Quarto Publish

on:
  push:
    branches: [ main ]
  pull_request:
    branches: [ main ]
  workflow_dispatch:

jobs:
  build-deploy:
    runs-on: ubuntu-latest
    permissions:
      contents: read
      pages: write
      id-token: write

    steps:
      - name: Check out repository
        uses: actions/checkout@v4

      - name: Set up Python
        uses: actions/setup-python@v5
        with:
          python-version: '3.10'

      - name: Install uv
        uses: astral-sh/setup-uv@v3

      - name: Install Python dependencies
        run: |
          uv venv
          source .venv/bin/activate
          uv pip install -e .
          uv pip install jupyter ipykernel jupyter-cache

          # Verify installation
          python -c "import forestly; print('Forestly installed successfully')"

      - name: Set up Quarto
        uses: quarto-dev/quarto-actions/setup@v2
        with:
          version: 1.5.57

      - name: Configure Jupyter kernel
        run: |
          source .venv/bin/activate
          python -m ipykernel install --user --name=python3

          # List available kernels for debugging
          jupyter kernelspec list

      - name: Render Quarto documents
        run: |
          source .venv/bin/activate

          # Set Python path for Quarto
          export QUARTO_PYTHON=$(which python)
          echo "Using Python: $QUARTO_PYTHON"

          # Render all documents
          cd docs
          quarto render --execute

      - name: Inject required libraries
        run: |
          cd docs/_site

          # Check if site was generated
          if [ ! -d "." ] || [ -z "$(ls -A .)" ]; then
            echo "Error: _site directory is empty"
            exit 1
          fi

          # Inject libraries into HTML files
          for html_file in *.html; do
            if [ -f "$html_file" ]; then
              echo "Processing $html_file..."
              awk '
              BEGIN {scripts_inserted = 0}
              {
                  if (/<script/ && !scripts_inserted) {
                      print "<!-- Essential libraries for forest plot sparklines -->"
                      print "<script src=\"https://unpkg.com/react@17/umd/react.production.min.js\"></script>"
                      print "<script src=\"https://unpkg.com/react-dom@17/umd/react-dom.production.min.js\"></script>"
                      print "<script src=\"https://cdn.plot.ly/plotly-2.18.2.min.js\"></script>"
                      print "<!-- End essential libraries -->"
                      scripts_inserted = 1
                  }
                  print $0
              }' "$html_file" > "${html_file}.tmp"
              mv "${html_file}.tmp" "$html_file"
            fi
          done

          echo "Library injection completed"

      - name: Setup Pages
        uses: actions/configure-pages@v4

      - name: Upload artifact
        uses: actions/upload-pages-artifact@v3
        with:
          path: docs/_site

      - name: Deploy to GitHub Pages
        id: deployment
        uses: actions/deploy-pages@v4