Update logsheet_schema_extended.csv

Author: bulricht

logsheet_schema_extended.csv

@@ -121,7 +121,7 @@ http://vocab.nerc.ac.uk/collection/P01/current/SO4XCLP1/"
 ,arr_date_hq,xsd:date,xsd:date,,,NA,NA, ,water;soil;arms,Sampling,mandatory,The date the samples arrived in the EMBRC HQ from the sampling operators according to ISO 8601,2021-12-31, ,
 ,arr_date_seq,xsd:date,xsd:date,,,NA,NA,,water;soil;arms,Sampling,mandatory,The date the samples arrived at the sequencing centre from the EMBRC HQ according to ISO 8601,2021-12-32, ,
 ,collection_date,xsd:date,xsd:date,,,NA,NA,,water;soil,Sampling,mandatory,"The time of sampling, as an instance (single point in time). In case no exact time is available, the date/time can be right truncated i.e. all of these are valid times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10; 2008-01-23; All formats are ISO8601 compliant",2021-08-31T10:00+02:00, , 
-,collection_date,xsd:date,xsd:date,,,NA,NA,,arms,Sampling,mandatory,The date of the ARMS unit retrieval. Formattinsg is ISO8601: 2008-01-23 (YYYY-MM-DD),2021-08-31,,
+,collection_date_arms,xsd:date,xsd:date,,,NA,NA,,arms,Sampling,mandatory,The date of the ARMS unit retrieval. Formattinsg is ISO8601: 2008-01-23 (YYYY-MM-DD),2021-08-31,,
 This is a string because it can either be a single value or a range of values,depth,xsd:string,xsd:string,, ,http://vocab.nerc.ac.uk/collection/P01/current/ADEPZZ01/,metre,http://vocab.nerc.ac.uk/collection/P06/current/ULAA/,water;soil;arms,Sampling,mandatory,"Vertical distance below local surface at which sample was taken. For sediment, depth is measured from sediment surface, respectively. Depth can be reported as an interval for subsurface samples",0.01-0.05,,
 ,env_material,xsd:list ,xsd:list ,,"string + "";""",https://genomicsstandardsconsortium.github.io/mixs/0000014/,NA,,water;soil;arms,Sampling,mandatory,"In this field, report which environmental material or materials (semicolon separated) immediately surrounded your sample or specimen prior to sampling, using one or more subclasses of ENVO’s environmental material class: http://purl.obolibrary.org/obo/ENVO_00010483. The environmental material level refers to the material that was displaced by the sample, or material in which a sample was embedded, prior to the sampling event. Environmental material terms are generally mass nouns. Examples include: air, soil, or water. Format (one term): termLabel [termID]; Format (multiple terms): termLabel [termID];termLabel [termID];termLabel [termID]. Example: Annotating a fish swimming in the upper 100 m of the Atlantic Ocean, consider: ocean water [ENVO:00002151]. Example: Annotating a duck on a pond consider: pond water [ENVO:00002228];air ENVO_00002005. If needed, request new terms on the ENVO tracker, identified here: http://www.obofoundry.org/ontology/envo.html",sediment [ENVO:00002007]; deep marine sediment [ENVO:00002113]; hyperthermophilic sediment [ENVO:01000133], , 
 ,investigation_type,xsd:string,xsd:string,,,NA,NA,,water;soil;arms,Sampling,mandatory,Nucleic Acid Sequence Report is the root element of all MIxS compliant reports as standardized by the Genomic Standards Consortium,metagenome,yes  ,check out the mixs vocab (https://genomicsstandardsconsortium.github.io/mixs/)?