It would be great to document that most source qualifiers in user-submitted flat files are stripped and will not end up in the final flat file.
We (Pathoplexus/Loculus) found this out through experimentation and got clarification via help desk tickets but this is something that would be really useful for other users to have publicly available.
Somewhere here for example: https://ena-docs.readthedocs.io/en/latest/submit/fileprep/flat-file-example.html