EpiNow2/.github/workflows/pr-commands.yaml at 5d17a0f6ba45afd3b6cf60e0922a3999aa883f18 · epiforecasts/EpiNow2 · GitHub

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---
# Github Actions workflow to render EpiNow2 documents
# yamllint disable rule:line-length

name: Commands

'on':
  issue_comment:
    types: [created]

jobs:
  document:
    if: contains(github.event.comment.body, '/document')
    name: document
    runs-on: macOS-latest
    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
    steps:
      - uses: actions/checkout@v6
      - uses: r-lib/actions/pr-fetch@v2
        with:
          repo-token: ${{ secrets.GITHUB_TOKEN }}
      - uses: r-lib/actions/setup-r@v2
      - name: Install dependencies
        run: Rscript -e 'install.packages(c("remotes", "roxygen2"))' -e 'remotes::install_deps(dependencies = TRUE)'
      - name: Document
        run: Rscript -e 'roxygen2::roxygenise()'
      - name: commit
        run: |
          git config --local user.email "actions@github.com"
          git config --local user.name "GitHub Actions"
          git add man/\* NAMESPACE
          git commit -m 'Document'
      - uses: r-lib/actions/pr-push@v2
        with:
          repo-token: ${{ secrets.GITHUB_TOKEN }}

  style:
    if: contains(github.event.comment.body, '/style')
    name: style
    runs-on: macOS-latest
    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
    steps:
      - uses: actions/checkout@v6
      - uses: r-lib/actions/pr-fetch@v2
        with:
          repo-token: ${{ secrets.GITHUB_TOKEN }}
      - uses: r-lib/actions/setup-r@v2
      - name: Install dependencies
        run: Rscript -e 'install.packages(c("styler", "roxygen2", "remotes"))' -e 'remotes::install_deps(dependencies = TRUE)'
      - name: Whitespace
        run: |
          find . -type f \( -name 'DESCRIPTION' -name "*.R" -o -name "*.stan" \) -exec sed -i '' -e 's/[ \t]*$//' {} \;
      - name: Style
        run: Rscript -e 'styler::style_pkg()'
      - name: Document
        run: Rscript -e 'roxygen2::roxygenise()'
      - name: commit
        run: |
          git config --local user.email "actions@github.com"
          git config --local user.name "GitHub Actions"
          git add \*.R
          git add \*.stan
          git add DESCRIPTION
          git add man/\* NAMESPACE
          git commit -m 'Style'
      - uses: r-lib/actions/pr-push@v2
        with:
          repo-token: ${{ secrets.GITHUB_TOKEN }}

  integration-tests:
    if: >
      github.event.issue.pull_request &&
      contains(github.event.comment.body, '/integration-tests')
    name: integration-tests
    runs-on: macos-latest
    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
      NOT_CRAN: true
      EPINOW2_SKIP_INTEGRATION: false
    steps:
      - uses: actions/checkout@v6
      - uses: r-lib/actions/pr-fetch@v2
        with:
          repo-token: ${{ secrets.GITHUB_TOKEN }}
      - name: Post start comment
        uses: actions/github-script@v8
        with:
          script: |
            github.rest.issues.createComment({
              issue_number: context.issue.number,
              owner: context.repo.owner,
              repo: context.repo.repo,
              body: '🧪 Starting integration tests... This may take ~1 hour.'
            })
      - uses: r-lib/actions/setup-pandoc@v2
      - uses: r-lib/actions/setup-r@v2
        with:
          use-public-rspm: true
      - uses: r-lib/actions/setup-r-dependencies@v2
        with:
          extra-packages: |
            stan-dev/cmdstanr
      - name: Install cmdstan
        uses: epinowcast/actions/install-cmdstan@v1
        with:
          cmdstan-version: 'latest'
          num-cores: 2
      - name: Run full test suite
        id: tests
        run: |
          testthat::test_local(reporter = testthat::ProgressReporter$new(max_failures = Inf))
        shell: Rscript {0}
      - name: Post success comment
        if: success()
        uses: actions/github-script@v8
        with:
          script: |
            github.rest.issues.createComment({
              issue_number: context.issue.number,
              owner: context.repo.owner,
              repo: context.repo.repo,
              body: '✅ Integration tests passed!'
            })
      - name: Post failure comment
        if: failure()
        uses: actions/github-script@v8
        with:
          script: |
            github.rest.issues.createComment({
              issue_number: context.issue.number,
              owner: context.repo.owner,
              repo: context.repo.repo,
              body: '❌ Integration tests failed. Check the [workflow run](${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }}) for details.'
            })