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examples.html
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<!DOCTYPE html>
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<head>
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<title>RnBeads</title>
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<h1 class="mt-4 mb-3">Examples <!-- <small>Subheading</small> --></h1>
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<div class="col-md-12">
This site contains example analysis reports generated by <code>RnBeads</code>. You can also download the corresponding datasets and create analysis reports using the following commands:
<pre class="pre-scrollable">
rnb.run.example(1)
rnb.run.example(2)
rnb.run.example(3)
</pre>
</div>
</div>
<div class="row">
<div class="col-md-4">
<h3>Example 1</h3>
<p>Analysis of DNA methylation in a large cohort of cancer patients using the Infinium 450k assay</p>
<p><i>↳ <a href="./materials/example_1/index.html">View analysis reports</a></i></p>
<p>
This example contains data from the <a href="http://cancergenome.nih.gov/">The Cancer Genome Atlas (TCGA)</a> assayed using the Infinium 450k assay.
</p>
</div>
<div class="col-md-4">
<h3>Example 2</h3>
<p>Analysis of DNA methylation during adult stem cell differentiation in the blood and skin lineages using reduced representation bisulfite sequencing (RRBS)</p>
<p><i>↳ <a href="./materials/example_2/index.html">View analysis reports</a></i></p>
<!-- <p>
For running this example using the <a href="webservice.html"><code>RnBeads</code> webservice</a> on a subset of of selected blood samples download the data below, use the <code>bisulfite sequencing in mouse</code> profile and make sure <code>loading.bed.style</code> is set to <code>EPP</code>.
</p>
<p><i>↳ <a href="./materials/data/example_webservice_bloodSubset.zip">Download the bed files (zip)</a></i></p>
<p><i>↳ <a href="./materials/data/example_webservice_bloodSubset_samples.csv">Download the sample annotation table (csv)</a></i></p> -->
</div>
<div class="col-md-4">
<h3>Example 3</h3>
<p>DNA methylation in embryonic stem cells (taken from the vignette)</p>
<p><i>↳ <a href="./materials/example_3/index.html">View analysis reports</a></i></p>
<p><i>↳ <a href="./materials/data/Ziller2011_PLoSGen_450K.zip">Download the dataset</a></i></p>
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