diff --git a/.github/workflows/python.yml b/.github/workflows/python.yml index 0ee381f..08e951d 100644 --- a/.github/workflows/python.yml +++ b/.github/workflows/python.yml @@ -22,13 +22,13 @@ jobs: python-version: "3.11" - name: Install dependencies run: | - pip install poetry - poetry install + pip install uv + uv sync - name: Lint with ruff - run: poetry run ruff check + run: uv run ruff check - name: Check formatting with ruff - run: poetry run ruff format --check + run: uv run ruff format --check - name: Typecheck with mypy - run: poetry run mypy --strict src + run: uv run mypy --strict src - name: Test with pytest - run: poetry run pytest tests + run: uv run pytest tests diff --git a/README.md b/README.md index 5b3605f..da316db 100644 --- a/README.md +++ b/README.md @@ -12,8 +12,8 @@ The `config` file is a file that is sourced in other bash scripts, and so must follow bash syntax. It describes which sources to install where. The install procedure is done through the following commands: -1. Create a python virtual environment (e.g. `python -m venv /path/to/venv`) and source it (`source /path/to/venv/bin/activate`) -2. Run `pip install .` in root folder. The cli tool `deploy` has been installed (`deploy --help` for information) +1. Install [uv](https://docs.astral.sh/uv/getting-started/installation/): the package manager that we use +2. Run `uv sync` in root folder. The cli tool `deploy` has been installed (`deploy --help` for information) 3. Run `deploy build` in order to start the build process. # Development Using Docker diff --git a/deploy_tests/test_pflotran.py b/deploy_tests/test_pflotran.py index 1921b46..a315e1a 100644 --- a/deploy_tests/test_pflotran.py +++ b/deploy_tests/test_pflotran.py @@ -20,9 +20,9 @@ def test_version() -> None: ) match = re.search(r" Pflotran (\d+\.\d+sv\d+)\+\n", proc.stdout.decode()) - assert ( - match - ), f"Version not found in the following pflotran output: {proc.stdout.decode()}" + assert match, ( + f"Version not found in the following pflotran output: {proc.stdout.decode()}" + ) # Get the version as set by `deploy test` version = semver.Version.parse(os.environ["pflotran_version"]) diff --git a/devenv.lock b/devenv.lock index 94463be..78eabc0 100644 --- a/devenv.lock +++ b/devenv.lock @@ -3,10 +3,10 @@ "devenv": { "locked": { "dir": "src/modules", - "lastModified": 1735883199, + "lastModified": 1772143911, "owner": "cachix", "repo": "devenv", - "rev": "d67d04ae2dd3bc3723e615003034ba752e8db8c3", + "rev": "83c4b5682b84fe04c049970792f38d5879d3c0f1", "type": "github" }, "original": { @@ -19,30 +19,51 @@ "flake-compat": { "flake": false, "locked": { - "lastModified": 1733328505, - "owner": "edolstra", + "lastModified": 1767039857, + "owner": "NixOS", "repo": "flake-compat", - "rev": "ff81ac966bb2cae68946d5ed5fc4994f96d0ffec", + "rev": "5edf11c44bc78a0d334f6334cdaf7d60d732daab", "type": "github" }, "original": { - "owner": "edolstra", + "owner": "NixOS", "repo": "flake-compat", "type": "github" } }, + "git-hooks": { + "inputs": { + "flake-compat": "flake-compat", + "gitignore": "gitignore", + "nixpkgs": [ + "nixpkgs" + ] + }, + "locked": { + "lastModified": 1772024342, + "owner": "cachix", + "repo": "git-hooks.nix", + "rev": "6e34e97ed9788b17796ee43ccdbaf871a5c2b476", + "type": "github" + }, + "original": { + "owner": "cachix", + "repo": "git-hooks.nix", + "type": "github" + } + }, "gitignore": { "inputs": { "nixpkgs": [ - "pre-commit-hooks", + "git-hooks", "nixpkgs" ] }, "locked": { - "lastModified": 1709087332, + "lastModified": 1762808025, "owner": "hercules-ci", "repo": "gitignore.nix", - "rev": "637db329424fd7e46cf4185293b9cc8c88c95394", + "rev": "cb5e3fdca1de58ccbc3ef53de65bd372b48f567c", "type": "github" }, "original": { @@ -52,11 +73,14 @@ } }, "nixpkgs": { + "inputs": { + "nixpkgs-src": "nixpkgs-src" + }, "locked": { - "lastModified": 1733477122, + "lastModified": 1770434727, "owner": "cachix", "repo": "devenv-nixpkgs", - "rev": "7bd9e84d0452f6d2e63b6e6da29fe73fac951857", + "rev": "8430f16a39c27bdeef236f1eeb56f0b51b33d348", "type": "github" }, "original": { @@ -66,32 +90,31 @@ "type": "github" } }, - "pre-commit-hooks": { - "inputs": { - "flake-compat": "flake-compat", - "gitignore": "gitignore", - "nixpkgs": [ - "nixpkgs" - ] - }, + "nixpkgs-src": { + "flake": false, "locked": { - "lastModified": 1735882644, - "owner": "cachix", - "repo": "pre-commit-hooks.nix", - "rev": "a5a961387e75ae44cc20f0a57ae463da5e959656", + "lastModified": 1769922788, + "narHash": "sha256-H3AfG4ObMDTkTJYkd8cz1/RbY9LatN5Mk4UF48VuSXc=", + "owner": "NixOS", + "repo": "nixpkgs", + "rev": "207d15f1a6603226e1e223dc79ac29c7846da32e", "type": "github" }, "original": { - "owner": "cachix", - "repo": "pre-commit-hooks.nix", + "owner": "NixOS", + "ref": "nixpkgs-unstable", + "repo": "nixpkgs", "type": "github" } }, "root": { "inputs": { "devenv": "devenv", + "git-hooks": "git-hooks", "nixpkgs": "nixpkgs", - 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