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eseilereseiler
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[INFRA] Proper project
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Lines changed: 376 additions & 63 deletions

‎.github/dependabot.yml‎

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# SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
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# SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
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# SPDX-License-Identifier: CC0-1.0
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# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
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version: 2
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updates:
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- package-ecosystem: "github-actions"
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directory: "/"
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schedule:
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interval: "weekly"

‎.github/workflows/ci_license_check.yml‎

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# SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
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# SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
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# SPDX-License-Identifier: CC0-1.0
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name: REUSE Compliance Check
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on:
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push:
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branches:
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- 'main'
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pull_request:
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workflow_dispatch:
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concurrency:
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group: license-${{ github.event.pull_request.number || github.ref }}
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cancel-in-progress: ${{ github.event_name != 'push' }}
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jobs:
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test:
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runs-on: ubuntu-latest
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timeout-minutes: 10
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if: github.repository_owner == 'seqan' || github.event_name == 'workflow_dispatch'
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steps:
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- uses: actions/checkout@v4
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- name: REUSE Compliance Check
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uses: fsfe/reuse-action@v5

‎.github/workflows/ci_linux.yml‎

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# SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
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# SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
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# SPDX-License-Identifier: CC0-1.0
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name: Linux
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on:
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push:
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branches:
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- 'main'
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pull_request:
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workflow_dispatch:
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concurrency:
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group: linux-${{ github.event.pull_request.number || github.ref }}
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cancel-in-progress: ${{ github.event_name != 'push' }}
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env:
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TZ: Europe/Berlin
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defaults:
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run:
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shell: bash -Eeuxo pipefail {0}
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jobs:
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build:
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runs-on: ubuntu-latest
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timeout-minutes: 60
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name: ${{ matrix.compiler }} C++${{ matrix.cpp }} ${{ matrix.build_type }}
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if: github.repository_owner == 'seqan' || github.event_name == 'workflow_dispatch'
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strategy:
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fail-fast: false
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matrix:
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compiler: ["clang-latest", "clang-second-latest", "clang-third-latest", "gcc-latest", "gcc-second-latest", "gcc-third-latest", "intel"]
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cpp: [20, 23, 26]
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build_type: [Release, Debug]
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exclude:
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- compiler: gcc-third-latest
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cpp: 26
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container:
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image: ghcr.io/seqan/${{ matrix.compiler }}
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steps:
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- name: Checkout
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uses: actions/checkout@v4
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- name: Configure tests
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run: |
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mkdir build && cd build
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cmake ../ -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} \
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-DCMAKE_CXX_STANDARD=${{ matrix.cpp }}
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- name: Build tests
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working-directory: build
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run: make -k
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- name: Run tests
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working-directory: build
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run: ctest . -j --output-on-failure --no-tests=error
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‎.github/workflows/ci_macos.yml‎

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# SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
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# SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
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# SPDX-License-Identifier: CC0-1.0
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name: macOS
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on:
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push:
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branches:
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- 'main'
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pull_request:
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workflow_dispatch:
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concurrency:
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group: macos-${{ github.event.pull_request.number || github.ref }}
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cancel-in-progress: ${{ github.event_name != 'push' }}
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env:
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TZ: Europe/Berlin
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defaults:
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run:
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shell: bash -Eeuxo pipefail {0}
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jobs:
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build:
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name: ${{ matrix.compiler }} C++${{ matrix.cpp }} ${{ matrix.build_type }}
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runs-on: macos-latest
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timeout-minutes: 60
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if: github.repository_owner == 'seqan' || github.event_name == 'workflow_dispatch'
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strategy:
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fail-fast: false
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matrix:
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compiler: ["clang-latest", "clang-second-latest", "clang-third-latest", "gcc-latest", "gcc-second-latest", "gcc-third-latest"]
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cpp: [20, 23, 26]
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build_type: [Release, Debug]
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exclude:
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- compiler: gcc-third-latest
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cpp: 26
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steps:
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- name: Checkout
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uses: actions/checkout@v4
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- name: Setup compiler
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uses: seqan/actions/setup-compiler@main
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with:
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compiler: ${{ matrix.compiler }}
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- name: Configure tests
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run: |
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mkdir build && cd build
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cmake ../ -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} \
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-DCMAKE_CXX_STANDARD=${{ matrix.cpp }}
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- name: Build tests
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working-directory: build
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run: make -k
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- name: Run tests
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working-directory: build
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run: ctest . -j --output-on-failure --no-tests=error

‎.github/workflows/ci_win.yml‎

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# SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
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# SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
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# SPDX-License-Identifier: CC0-1.0
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name: Windows
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on:
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push:
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branches:
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- 'main'
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pull_request:
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workflow_dispatch:
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concurrency:
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group: windows-${{ github.event.pull_request.number || github.ref }}
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cancel-in-progress: ${{ github.event_name != 'push' }}
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env:
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TZ: Europe/Berlin
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jobs:
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build:
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name: ${{ matrix.generator }} C++${{ matrix.cpp }} ${{ matrix.build_type }}
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runs-on: windows-2022
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timeout-minutes: 60
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if: github.repository_owner == 'seqan' || github.event_name == 'workflow_dispatch'
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strategy:
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fail-fast: false
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matrix:
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generator: "Visual Studio 17 2022"
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cpp: [20, 23, 26]
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build_type: [Release, Debug]
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steps:
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- name: Setup MSVC
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uses: ilammy/msvc-dev-cmd@v1
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- name: Checkout
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uses: actions/checkout@v4
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- name: Configure tests
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run: |
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New-Item -Name "build" -ItemType "directory" -Force
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cd build
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cmake .. -G "${{ matrix.generator }}" `
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-DCMAKE_CXX_FLAGS="/EHsc /W4" `
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-DCMAKE_CXX_STANDARD=${{ matrix.cpp }}
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- name: Build tests
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working-directory: build
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run: cmake --build . --config "${{ matrix.build_type }}" --parallel
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- name: Run tests
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working-directory: build
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run: ctest . -j -C "${{ matrix.build_type }}" --output-on-failure --no-tests=error --timeout 240

‎CMakeLists.txt‎

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# SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
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# SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
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# SPDX-License-Identifier: BSD-3-Clause
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cmake_minimum_required (VERSION 3.25)
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project (SEQAN_STD
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LANGUAGES CXX
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VERSION 1.0.0
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DESCRIPTION "Implementation of several C++23/26 views"
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)
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get_filename_component (SEQAN_STD_DIR_NAME "${CMAKE_CURRENT_SOURCE_DIR}" NAME)
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if (NOT SEQAN_STD_DIR_NAME STREQUAL "seqan-std")
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message (FATAL_ERROR "The directory name must be 'seqan-std'.")
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endif ()
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file (REAL_PATH "${CMAKE_CURRENT_SOURCE_DIR}/.." SEQAN_STD_INCLUDE_DIR)
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add_library (seqan-std INTERFACE)
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target_sources (seqan-std INTERFACE
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FILE_SET HEADERS
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TYPE HEADERS
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BASE_DIRS ${SEQAN_STD_INCLUDE_DIR}
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FILES
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${SEQAN_STD_INCLUDE_DIR}/seqan-std/all_view.hpp
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${SEQAN_STD_INCLUDE_DIR}/seqan-std/chunk_by_view.hpp
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${SEQAN_STD_INCLUDE_DIR}/seqan-std/chunk_view.hpp
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${SEQAN_STD_INCLUDE_DIR}/seqan-std/concepts.hpp
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${SEQAN_STD_INCLUDE_DIR}/seqan-std/detail/adaptor_base.hpp
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${SEQAN_STD_INCLUDE_DIR}/seqan-std/detail/adaptor_for_view_without_args.hpp
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${SEQAN_STD_INCLUDE_DIR}/seqan-std/detail/adaptor_from_functor.hpp
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${SEQAN_STD_INCLUDE_DIR}/seqan-std/detail/exposition_only.hpp
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${SEQAN_STD_INCLUDE_DIR}/seqan-std/detail/movable_box.hpp
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${SEQAN_STD_INCLUDE_DIR}/seqan-std/detail/non_propagating_cache.hpp
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${SEQAN_STD_INCLUDE_DIR}/seqan-std/enumerate_view.hpp
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${SEQAN_STD_INCLUDE_DIR}/seqan-std/join_with_view.hpp
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${SEQAN_STD_INCLUDE_DIR}/seqan-std/pair.hpp
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${SEQAN_STD_INCLUDE_DIR}/seqan-std/to.hpp
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${SEQAN_STD_INCLUDE_DIR}/seqan-std/tuple.hpp
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${SEQAN_STD_INCLUDE_DIR}/seqan-std/zip_view.hpp
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)
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target_compile_features (seqan-std INTERFACE cxx_std_20)
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add_library (seqan::std ALIAS seqan-std)
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option (SEQAN_STD_TEST "Enable testing for seqan-std." ${PROJECT_IS_TOP_LEVEL})
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if (SEQAN_STD_TEST)
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enable_testing ()
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add_subdirectory (test)
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endif ()

‎chunk_by_view.hpp‎

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# include "all_view.hpp"
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# include "concepts.hpp"
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# include "detail/adaptor_from_functor.hpp"
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# include "detail/compiler_definitions.hpp"
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# include "detail/movable_box.hpp"
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# include "detail/non_propagating_cache.hpp"
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‎chunk_view.hpp‎

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# include "all_view.hpp"
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# include "concepts.hpp"
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# include "detail/adaptor_from_functor.hpp"
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# include "detail/compiler_definitions.hpp"
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# include "detail/exposition_only.hpp"
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# include "detail/non_propagating_cache.hpp"
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// correctly.
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// MSVC: is using std::_Signed128
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// stdlibc++: is using __int128
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#if defined(_MSC_VER) && !defined(__clang__)
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using max_signed_t = std::_Signed128;
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using max_unsigned_t = std::_Unsigned128;
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#else
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__extension__ using max_signed_t = __int128;
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__extension__ using max_unsigned_t = unsigned __int128;
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#endif
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# if defined(_MSC_VER) && !defined(__clang__)
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using max_signed_t = std::_Signed128;
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using max_unsigned_t = std::_Unsigned128;
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# else
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__extension__ using max_signed_t = __int128;
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__extension__ using max_unsigned_t = unsigned __int128;
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# endif
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constexpr auto to_unsigned_like(max_signed_t v) noexcept
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{
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requires std::ranges::input_range<V>
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class chunk_view<V> : public std::ranges::view_interface<chunk_view<V>>
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{
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// clang-format off
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SEQAN_STD_NESTED_VISIBILITY
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// clang-format on
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private:
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V base_;
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std::ranges::range_difference_t<V> n_;
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std::ranges::range_difference_t<V> remainder_ = 0;
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std::ranges::range_difference_t<Base> missing_ = 0;
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constexpr chunk_view_iterator(Parent * parent,
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std::ranges::iterator_t<Base> current,
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std::ranges::range_difference_t<Base> missing = 0) :
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std::ranges::iterator_t<Base> current,
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std::ranges::range_difference_t<Base> missing = 0) :
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current_{current},
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end_{std::ranges::end(parent->base_)},
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n_{parent->n_},

‎detail/compiler_definitions.hpp‎

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‎enumerate_view.hpp‎

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# include "all_view.hpp"
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# include "concepts.hpp"
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# include "detail/adaptor_from_functor.hpp"
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# include "detail/compiler_definitions.hpp"
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# include "detail/exposition_only.hpp"
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namespace seqan::stl::ranges
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requires seqan::stl::detail::range_with_movable_references<V>
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class enumerate_view : public std::ranges::view_interface<enumerate_view<V>>
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{
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// clang-format off
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SEQAN_STD_NESTED_VISIBILITY
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// clang-format on
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private:
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V base_ = V();
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template <bool Const>

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