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article{,
author={},
year={},
title={},
journal={},
volume={},
number={},
pages={}
}
@preamble{ " \newcommand{\noop}[1]{} " }
@article{Aguiar09,
author={F. C. Aguiar and M. T. Ferreira and A. Albuquerque and P. Rodriguez-Gonzalez and P. Segurado},
year={2009},
title={Structural and functional responses of riparian vegetation to human disturbance: Performance and spatial scale-dependence},
journal={Fundamental and Applied Limnology},
volume={175},
number={3},
pages={249-267}
}
@incollection{Akaike73,
author={H. Akaike},
editor={B. N. Petrov and F. Csaki},
year={1973},
title={Information theory and an extension of the maximum likelihood principle},
booktitle={Second International Symposium on Information Theory},
address={Akademiai Kiado, Budapest},
pages={267-281}
}
@article{Alexander08,
author={M. L. Alexander and M. P. Woodford and S. C. Hotchkiss},
year={2008},
title={Freshwater macrophyte communities in lakes of variable landscape position and development in northern {W}isconsin, {U.S.A.}},
journal={Aquatic Botany},
volume={88},
number={1},
pages={77-86}
}
@article{Alpine88,
author={A. E. Alpine and J. E. Cloern},
year={1988},
title={Phytoplankton growth rates in a light-limited environment, {S}an {F}rancisco {B}ay},
journal={Marine Ecology Progress Series},
volume={44},
number={2},
pages={167-173}
}
@article{Alpine92,
author={A. E. Alpine and J. E. Cloern},
year={1992},
title={Trophic interactions and direct physical effects control phytoplankton biomass and production in an estuary},
journal={Limnology and Oceanography},
volume={37},
number={5},
pages={946-955}
}
@techreport{Anderson01,
author={J. L. Anderson and J. C. Bell and T. H. Cooper and D. F. Grigal},
year={2001},
title={Soils and landscapes of {M}innesota},
institution={University of Minnesota Extension},
address={St. Paul, Minnesota},
url={http://www.extension.umn.edu/distribution/cropsystems/dc2331.html}
}
@techreport{Anderson99,
author={K. A. Anderson and T. J. Kelly and R. M. Sushak and C. A. Hagley and D. A. Jensen and G. M. Kreag},
year={1999},
title={Summary report on public perceptions of the impacts, use, and future of {M}innesota lakes: Results of the 1998 {M}innesota lake survey},
institution={University of Minnesota Sea Grant Program, Minnesota Department of Natural Resources, Office of Management and Budget Services},
address={Duluth, Minnesota}
}
@techreport{Anon93,
author={{Anonymous}},
year={1993},
title={Manual of Instructions for Lake Survey},
institution={Division of Fish and Wildlife, Section of Fisheries, Minnesota Department of Natural Resources},
number={No. 147},
address={St. Paul, Minnesota},
url={http://files.dnr.state.mn.us/publications/fisheries/special_reports/147.pdf}
}
@article{Ansola95,
author={G. Ansola and C. Fernandez and E. Deluis},
year={1995},
title={Removal of organic-matter and nutrients from urban waste-water by using an experimental emergent aquatic macrophyte system},
journal={Ecological Engineering},
volume={5},
number={1},
pages={13-19}
}
@misc{APHA05,
author={{APHA (American Public Health Association)}},
year={2005},
title={Standard methods for the examination of water and wastewater},
note={Washington, DC}
}
@article{Arhonditsis08,
author={G. B. Arhonditsis and G. Perhar and W. Zhang and E. Massos and M. Shi and A. Das},
year={2008},
title={Addressing equifinality and uncertainty in eutrophication models},
journal={Water Resources Research},
volume={44},
number={1},
pages={W01420}
}
@article{Arlot10,
author={S. Arlot and A. Celisse},
year={2010},
title={A survey of cross-validation procedures for model selection},
journal={Statistics Surveys},
volume={4},
number={},
pages={40-79}
}
@misc{ASC17,
author = {ASC},
year = {2017},
title = {{Assessment of nutrient status and trends in the Delta in 2001-2016: Effects of drought on ambient concentrations and trends. Prepared by the Aquatic Science Center (ASC), T. Jabusch, P. Trowbridge, A. Wong, and M. Heberger for the Delta Regional Monitoring Program}},
note = {Report v1.2}
}
@article{Aulenbach06,
author={B. T. Aulenbach and R. P. Hooper},
year={2006},
title={The composite-method: An improved method for stream-water solute load estimation},
journal={Hydrological Processes},
volume={20},
number={14},
pages={3029-3047}
}
@incollection{Baatz00,
author={M. Baatz and A. Sch\"{a}pe},
editor={J. Strobl and T. Blaschke and G. Griesebner},
year={2000},
title={Multiresolution segmentation: An optimization approach for high quality multi-scale image segmentation},
booktitle={Angewandte Geographische Informationsverarbeitung XII. Beitr\"{a}ge zum AGIT-Symposium Salzburg 2000},
publisher={Herbert Wichmann Verlag},
address={Berlin},
pages={12-23}
}
@article{Bajer18,
author={P. G. Bajer and M. W. Beck and P. J. Hundt},
year={2018},
title={Effect of non-native versus native invaders on macrophyte richness: are carp and bullheads ecological proxies?},
journal={Hydrobiologia},
volume={},
number={},
pages={},
doi={10.1007/s10750-018-3592-1}
}
@article{Bajer16,
author={P. G. Bajer and M. W. Beck and T. K. Cross and J. Koch and B. Bartodziej and P. W. Sorensen},
year={2016},
title={Biological invasion by a benthivorous fish reduced the cover and species richness of aquatic plants in most lakes of a large {N}orth {A}merican region},
journal={Global Change Biology},
volume={22},
number={12},
pages={3937-3947},
doi={10.1111/gcb.13377}
}
@incollection{Ball00,
author={G. R. Ball and D. Palmer-Brown and G. E. Mills},
editor={S. Lek and J. F. Gu\'{e}gan},
year={2000},
title={A comparison of artificial neuronal network and conventional statistical techniques for analysing environmental data},
booktitle={{Artificial Neuronal Networks: Application to Ecology and Evolution}},
publisher={Springer-Verlag},
address={Berlin, Germany},
pages={165-183}
}
@article{Barbour00,
author={M. T. Barbour and W. F. Swietlik and S. K. Jackson and D. L. Courtemanch and S. P. Davies and C. O. Yoder},
year={2000},
title={Measuring the attainment of biological integrity in the {USA}: A critical element of ecological integrity},
journal={Hydrobiologia},
volume={422-423},
number={0},
pages={453-464}
}
@article{Barbour96,
author={M. T. Barbour and J. Gerritsen and G. E. Griffith and R. Frydenborg and E. McCarron and J. S. White and M. L. Bastian},
year={1996},
title={A framework for biological criteria for {F}lorida streams using benthic macroinvertebrates},
journal={Journal of the North American Benthological Society},
volume={15},
number={2},
pages={185-211}
}
@article{Barko82,
author={J. W. Barko and D. G. Hardin and M. S. Matthews},
year={1982},
title={Growth and morphology of submersed freshwater macrophytes in relation to light and temperature},
journal={Canadian Journal of Botany},
volume={60},
number={6},
pages={877-887}
}
@article{Barko91,
author={J. W. Barko and D. Gunnison and S. R. Carpenter},
year={1991},
title={Sediment interactions with submersed macrophyte growth and community dynamics},
journal={Aquatic Botany},
volume={41},
pages={41-65}
}
@incollection{Bates92,
author={D. M. Bates and J. M. Chambers},
editor={J. M. Chambers and T. J. Hastie},
year={1992},
title={Nonlinear models},
booktitle={Statistical Models in S},
publisher={Wadsworth and Brooks/Cole},
address={Pacific Grove, California},
pages={421-454}
}
@article{Batt12,
author={R. D. Batt and S. R. Carpenter},
year={2012},
title={Free-water lake metabolism: Addressing noisy time series with a {K}alman filter},
journal={Limnology and Oceanography: Methods},
volume={10},
number={},
pages={20-30}
}
@article{Bayraktarov2016,
abstract = {Land-use change in the coastal zone has led to worldwide degradation of marine coastal ecosystems and a loss of the goods and services they provide. Restoration is the process of assisting the recovery of an ecosystem that has been degraded, damaged, or destroyed and is critical for habitats where natural recovery is hindered. Uncertainties about restoration cost and feasibility can impede decisions on whether, what, how, where, and how much to restore. Here, we perform a synthesis of 235 studies with 954 observations from restoration or rehabilitation projects of coral reefs, seagrass, mangroves, saltmarshes and oyster reefs worldwide, and evaluate cost, survival of restored organisms, project duration, area, and techniques applied. Findings showed that while the median and average reported costs for restoration of one hectare of marine coastal habitat were around 80,000 US{\$} (2010) and 1,600,000 US{\$} (2010) respectively, the real total costs (median) are likely to be 2-4 times higher. Coral reefs and seag...},
archivePrefix = {arXiv},
arxivId = {arXiv:1011.1669v3},
author = {Bayraktarov, Elisa and Saunders, Megan I. and Abdullah, Sabah and Mills, Morena and Beher, Jutta and Possingham, Hugh P. and Mumby, Peter J. and Lovelock, Catherine E.},
doi = {10.1890/15-1077},
eprint = {arXiv:1011.1669v3},
isbn = {9780874216561},
issn = {10510761},
journal = {Ecological Applications},
month = {jun},
number = {4},
pages = {1055--1074},
pmid = {25246403},
title = {{The cost and feasibility of marine coastal restoration}},
url = {http://doi.wiley.com/10.1890/15-1077},
volume = {26},
year = {2016}
}
@article{Beck87,
author={M. B. Beck},
year={1987},
title={Water quality modeling: A review of the analysis of uncertainty},
journal={Water Resources Research},
volume={23},
number={8},
pages={1393-1442}
}
@phdthesis{Beckdiss,
author={M. W. Beck},
year={2013},
title={{M}innesota macrophytes: Linking aquatic plants, lake health, and human activities},
school={University of Minnesota},
address={St. Paul, Minnesota}
}
@article{BeckIR,
author={M. W. Beck and T. W. Jabusch and P. R. Trowbridge and D. B. Senn},
year={\noop{3002}in review},
title={Four decades of water quality change in the upper {S}an {F}rancisco {E}stuary},
journal={Environmental Science \& Technology},
volume={},
number={},
pages={},
doi={}
}
@article{BeckIP,
author={M. W. Beck},
year={\noop{3001}in press},
title={{NeuralNetTools}: Visualization and analysis tools for neural networks},
journal={Journal of Statistical Software},
volume={},
number={},
pages={},
doi={}
}
@article{Beck18,
author={M. W. Beck and K. Cressman and C. Griffin and J. Caffrey},
year={2018},
title={Water quality trends following anomalous phosphorus inputs to Grand Bay},
journal={Gulf and Caribbean Research},
volume={29},
number={1},
pages={1-14},
doi={10.18785/gcr.2901.02}
}
@article{Beck17,
author={M. W. Beck and R. R. Murphy},
year={2017},
title={Numerical and qualitative contrasts of two statistical models for water quality change in tidal waters},
journal={Journal of the American Water Resources Association},
volume={53},
number={1},
pages={197-219},
doi={10.1111/1752-1688.12489}
}
@manual{Beck17b,
author={M. W. Beck},
year={2017},
title={{WRTDStidal: Weighted Regression for Water Quality Evaluation in Tidal Waters}},
note={R package version 1.1.0},
url={\url{http://CRAN.R-project.org/package=WRTDStidal}}
}
@article{Beck17c,
author={M. W. Beck and J. D. {Hagy III} and C. Le},
year={2017},
title={Quantifying seagrass light requirements using an algorithm to spatially resolve depth of colonization},
journal={Estuaries and Coasts},
volume={},
number={},
pages={1-17}
}
@article{Beck16c,
author={M. W. Beck and J. Alahuhta},
year={2016},
title={Ecological determinants of {P}otamogetontaxa in glacial lakes: assemblage composition, species richness, and species-level approach},
journal={Aquatic Sciences},
volume={},
number={},
pages={1-15},
doi={10.1007/s00027-016-0508-x}
}
@article{Beck16,
author={M. W. Beck},
year={2016},
title={{SWMPr}: An {R} package for retrieving, organizing, and analyzing environmental data for estuaries},
journal={The R Journal},
volume={8},
number={1},
pages={219-232}
}
@article{Beck15b,
author={M. W. Beck and J. D. {Hagy III} and M. C. Murrell},
year={2015},
title={Improving estimates of ecosystem metabolism by reducing effects of tidal advection on dissolved oxygen time series},
journal={Limnology and Oceanography: Methods},
volume={13},
number={12},
pages={731-745},
doi={10.1002/lom3.10062}
}
@article{Beck15,
author={M. W. Beck and J. D. {Hagy III}},
year={2015},
title={Adaptation of a weighted regression approach to evaluate water quality trends in an estuary},
journal={Environmental Modelling and Assessment},
volume={20},
number={6},
pages={637-655},
doi={10.1007/s10666-015-9452-8}
}
@article{Beck14b,
author={M. W. Beck and C. M. Tomcko and R. D. Valley and D. F. Staples},
year={2014},
title={Analysis of macrophyte indicator variation as a function of sampling, temporal, and stressor effects},
journal={Ecological Indicators},
volume={46},
number={},
pages={323-335},
doi={10.1016/j.ecolind.2014.07.002}
}
@article{Beck14a,
author={M. W. Beck and B. N. Wilson and B. Vondracek and L. K. Hatch},
year={2014},
title={Application of neural networks to quantify the utility of indices of biotic integrity for biological monitoring},
journal={Ecological Indicators},
volume={45},
number={},
pages={195-208},
doi={10.1016/j.ecolind.2014.04.002}
}
@article{Beck13c,
author={M. W. Beck and B. Voncracek and L. K. Hatch},
year={2013},
title={Between- and within-lake responses of macrophyte richness metrics to shoreline development},
journal={Lake and Reservoir Managmenet},
volume={29},
number={3},
pages={179-193},
doi={10.1080/10402381.2013.828806}
}
@article{Beck13b,
author={M. W. Beck and B. Vondracek and L. K. Hatch and J. Vinje},
year={2013},
title={Semi-automated analysis of high-resolution aerial images to quantify docks in glacial lakes},
journal={ISPRS Journal of Photogrammetry and Remote Sensing},
volume={81},
pages={60-69},
doi={10.1016/j.isprsjprs.2013.04.006}
}
@article{Beck13,
author={M. W. Beck and B. Vondracek and L. K. Hatch},
year={2013},
title={Environmental clustering of lakes to evaluate performance of a macrophyte index of biotic integrity},
journal={Aquatic Botany},
volume={108},
pages={16-25},
doi={10.1016/j.aquabot.2013.02.003}
}
@article{Beck12,
author={M. W. Beck and A. H. Claassen and P. Hundt},
year={2012},
title={Environmental and livelihood impacts of dams: Common lessons across development gradients that challenge sustainability},
journal={International Journal of River Basin Management},
volume={10},
number={1},
pages={73-92},
doi={10.1080/15715124.2012.656133}
}
@article{Beck10,
author={M. W. Beck and L. K. Hatch and B. Vondracek and R. D. Valley},
year={2010},
title={Development of a macrophyte-based index of biotic integrity for {M}innesota lakes},
journal={Ecological Indicators},
volume={10},
number={5},
pages={968-979},
doi={10.1016/j.ecolind.2010.02.006}
}
@article{Beck09,
author={M. W. Beck and L. K. Hatch},
year={2009},
title={A review of research on the development of lake indices of biotic integrity},
journal={Environmental Reviews},
volume={17},
pages={21-44},
doi={10.1139/A09-001}
}
@article{Bedoya11,
author={D. Bedoya and E. S. Manolakos and V. Novotny},
year={2011},
title={Prediction of biological integrity based on environmental similarity - Revealing the scale-dependent link between study area and top environmental predictors},
journal={Water Research},
volume={45},
number={7},
pages={2359-2374}
}
@article{Beisner06,
author={B. E. Beisner and P. R. Peres-Neto and E. S. Lindstrom and A. Barnett and M. L. Longhi},
year={2006},
title={The role of environmental and spatial processes in structuring lake communities from bacteria to fish},
journal={Ecology},
volume={87},
number={12},
pages={2985-2991}
}
@article{Bell09,
author={G. Bell and T. Hey and A. Szalay},
year={2009},
title={Beyond the data deluge},
journal={Science},
volume={323},
number={5919},
pages={1297-1298}
}
@article{Benitez97,
author={J. M. Benitez and J. L. Castro and I. Requena},
year={1997},
title={Are artificial neuronal networks black boxes?},
journal={IEEE Transactions on Neuronal Networks},
volume={8},
number={5},
pages={1156-1164}
}
@article{Bergmeir12,
title = {Neural Networks in {R} Using the Stuttgart Neural Network Simulator: {RSNNS}},
author = {Christoph Bergmeir and Jos\'e M. Ben\'itez},
journal = {Journal of Statistical Software},
year = {2012},
volume = {46},
number = {7},
pages = {1--26},
url = {http://www.jstatsoft.org/v46/i07/},
}
@article{Beyer2016,
abstract = {The Deepwater Horizon oil spill constituted an ecosystem-level injury in the northern Gulf of Mexico. Much oil spread at 1100–1300 m depth, contaminating and affecting deepwater habitats. Factors such as oil-biodegradation, ocean currents and response measures (dispersants, burning) reduced coastal oiling. Still, {\textgreater} 2100 km of shoreline and many coastal habitats were affected. Research demonstrates that oiling caused a wide range of biological effects, although worst-case impact scenarios did not materialize. Biomarkers in individual organisms were more informative about oiling stress than population and community indices. Salt marshes and seabird populations were hard hit, but were also quite resilient to oiling effects. Monitoring demonstrated little contamination of seafood. Certain impacts are still understudied, such as effects on seagrass communities. Concerns of long-term impacts remain for large fish species, deep-sea corals, sea turtles and cetaceans. These species and their habitats should continue to receive attention (monitoring and research) for years to come.},
author = {Beyer, Jonny and Trannum, Hilde C. and Bakke, Torgeir and Hodson, Peter V. and Collier, Tracy K.},
doi = {10.1016/j.marpolbul.2016.06.027},
file = {:T$\backslash$:/06{\_}LIBRARY/01{\_}SCIENCE{\_}REFERENCES/2016{\_}Beyer{\_}Environmental{\_}effects.pdf:pdf},
isbn = {0025-326X},
issn = {0025326X},
journal = {Marine Pollution Bulletin},
keywords = {Deepwater Horizon oil spill,Environmental effects,Review},
month = {sep},
number = {1},
pages = {28--51},
pmid = {27301686},
title = {{Environmental effects of the Deepwater Horizon oil spill: A review}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0025326X16304313},
volume = {110},
year = {2016}
}
@article{Bhangu97,
author={I. Bhangu and P. H. Whitfield},
year={1997},
title={Seasonal and long-term variations in water quality of the {S}keena {R}iver at {U}sk, {B}ritish {C}olumbia},
journal={Water Research},
volume={31},
number={9},
pages={2187-2194}
}
@article{Bianchi10,
author={T. S. Bianchi and S. F. DiMarco and J. H. Cowan Jr and R. D. Hetland and P. Chapman and J. W. Day and M. A. Allison},
year={2010},
title={The science of hypoxia in the {N}orthern {G}ulf of {M}exico: a review},
journal={Science of the Total Environment},
volume={408},
number={7},
pages={1471-1484}
}
@article{Bierman94,
author={V. J. Bierman and S. C. Hinz and D. W. Zhu and W. J. Wiseman and N. N. Rabalais and R. E. Turner},
year={1994},
title={A preliminary mass-balance model of primary productivity and dissolved oxygen in the {M}ississippi {R}iver plume/ inner {G}ulf shelf region},
journal={Estuaries},
volume={17},
number={4},
pages={886-899}
}
@book{Bishop95,
author={C. M. Bishop},
year={1995},
title={Neuronal Networks for Pattern Recognition},
publisher={Carendon Press},
address={Oxford, United Kingdom},
pages={482}
}
@book{Bivand08,
author={R. S. Bivand and E. J. Pebesma and V. G\'{o}mez-Rubio},
year={2008},
title={Applied Spatial Data Analysis with {R}},
publisher={Springer-Verlag},
address={New York, New York},
pages={376}
}
@manual{Bivand14,
author = {Roger Bivand and Colin Rundel},
title = {rgeos: Interface to Geometry Engine - Open Source (GEOS)},
year = {2014},
note = {R package version 0.3-8},
url = {http://CRAN.R-project.org/package=rgeos},
}
@article{Blake14,
author={R. E. Blake and J. E. Duffy and J. P. Richardson},
year={2014},
title={Patterns of seagrass community response to local shoreline development},
journal={Estuaries and Coasts},
volume={37},
number={6},
pages={1549-1561}
}
@techreport{Blann08,
author={K. Blann and M. Cornett},
year={2008},
title={{Identifying lake conservation priorities for The Nature Conservancy in Minnesota, North Dakota, and South Dakota}},
institution={The Nature Conservancy},
address={Minneapolis, Minnesota}
}
@article{Blaschke10,
author={T. Blaschke},
year={2010},
title={Object based image analysis for remote sensing},
journal={ISPRS Journal of Photogrammetry and Remote Sensing},
volume={65},
number={1},
pages={2-16}
}
@article{Blaschke01,
author={T. Blaschke and J. Strobl},
year={2001},
title={What's wrong with pixels? {S}ome recent development interfacing remote sensing and {GIS}},
journal={Interfacing Remote Sensing and GIS},
volume={14},
number={6},
pages={12-17}
}
@article{Blindow93,
author={I. Blindow and G. Andersson and A. Hargeby and S. Johansson},
year={1993},
title={Long-term pattern of alternative stable states in two shallow eutrophic lakes},
journal={Freshwater Biology},
volume={30},
number={1},
pages={159-167}
}
@incollection{Boet00,
author={P. Bo\"{e}t and T. Fuhs},
editor={S. Lek and J. F. Gu\'{e}gan},
year={2000},
title={Predicting presence of fish species in the {S}eine river basin using artifical neuronal networks},
booktitle={{Artificial Neuronal Networks: Application to Ecology and Evolution}},
publisher={Springer-Verlag},
address={Berlin, Germany},
pages={131-142}
}
@techreport{Boicourt98,
author={W. C. Boicourt and L. P. Sanford},
year={1998},
title={A hydrodynamic study of the {P}atuxent {R}iver estuary},
institution={Maryland Department of the Environment},
address={Baltimore, Maryland}
}
@article{Bokde16,
author={N. Bokde and K. Kulat and M. W. Beck and A. C. Gualberto},
year={2016},
title={R package imputeTestbench to compare imputation methods for univariate time series},
journal={arXiv},
volume={arXiv preprint arXiv:1608.00476},
number={},
pages={}
}
@techreport{Boler01,
author={R. Boler},
year={2001},
title={Surface water quality 1999-2000 {H}illsborough {C}ounty, {F}lorida},
institution={Environmental Protection Commission of Hillsborough County},
address={Tampa, Florida, USA}
}
@article{Borja09,
author={A. Borja and A. Ranasinghe and S. B. Weisberg},
year={2009},
title={Assessing ecological integrity in marine waters, using multiple indices and ecosystem components: Challenges for the future},
journal={Marine Pollution Bulletin},
volume={59},
number={1-3},
pages={1-4}
}
@article{Borja2016,
abstract = {Using a long-term (1995–2014) monitoring network, from 51 sampling stations in estuaries and coasts of the Basque Country (Bay of Biscay), the objective of this investigation was to assess the responsiveness of 83 variables in water (18), sediments (27), biota (26), phytoplankton (2), macroinvertebrates (5) and fishes (5) to different human pressures and management actions. We used a total of 3247 series of data to analyse trends of improvement and worsening in quality. In a high percentage of the cases, the management actions taken have resulted in positive effects in the environment, as shown by the trend analysis in this investigation. Overall, much more trends of improvement than of worsening have been observed; this is true for almost all the media and biological components studied, with the exception of phytoplankton; and it applies as well to almost all the stations and water bodies, with the exception of those corresponding to areas with water treatment pending of accomplishment. In estuaries with decreasing human pressures during the period, the percentage of series showing quality improvement was higher (approx. 30{\%}) than those showing worsening of quality (12{\%}). Moreover, in those water bodies showing an increase of pressure, variables which can be considered indicators of anthropogenic effects showed negative trends (quality worsening). On the other hand, some of the variables analysed were more affected by natural variability than by changes in pressures. That was the case of silicate, nitrate and suspended solids, which followed trends correlated to salinity, which, in turn, was related to the rainfall regime during the study period.},
author = {Borja, {\'{A}}ngel and Chust, Guillem and Rodr{\'{i}}guez, Jos{\'{e}} G. and Bald, Juan and Belzunce-Segarra, M{\textordfeminine} Jes{\'{u}}s and Franco, Javier and Garmendia, Joxe Mikel and Larreta, Joana and Menchaca, Iratxe and Muxika, I{\~{n}}igo and Solaun, Oihana and Revilla, Marta and Uriarte, Ainhize and Valencia, Victoriano and Zorita, Izaskun},
doi = {10.1016/j.scitotenv.2016.05.111},
file = {:T$\backslash$:/06{\_}LIBRARY/01{\_}SCIENCE{\_}REFERENCES/2016{\_}Borja{\_}The{\_}past.pdf:pdf},
isbn = {0048-9697},
issn = {18791026},
journal = {Science of the Total Environment},
keywords = {,Basque Country,Biological monitoring,Human pressures,Management actions,Phyisico-chemical monitoring},
pages = {698--711},
pmid = {27239713},
publisher = {Elsevier B.V.},
title = {{‘The past is the future of the present': Learning from long-time series of marine monitoring}},
url = {http://dx.doi.org/10.1016/j.scitotenv.2016.05.111},
volume = {566-567},
year = {2016}
}
@book{Borman01,
author={S. Borman and R. Korth and J. Temte},
year={2001},
title={Through the Looking Glass: A Field Guide to Aquatic Plants},
publisher={Wisconsin Lakes Partnership, Reindl Printing, Inc.},
address={Stevens Point, Wisconsin},
pages={248}
}
@article{Borman09,
author={S. C. Borman and S. M. Galatowitsch and R. M. Newman},
year={2009},
title={The effects of species immigrations and changing conditions on isoetid communities},
journal={Aquatic Botany},
volume={91},
number={3},
pages={143-150}
}
@article{Borsuk04b,
author={M. E. Borsuk and C. A. Stow and K. H. Reckhow},
year={2004},
title={Confounding effect of flow on estuarine response to nitrogen loading},
journal={Journal of Environmental Engineering-ASCE},
volume={130},
number={6},
pages={605-614}
}
@article{Borsuk04,
author={M. E. Borsuk and C. A. Stow and K. H. Reckhow},
year={2004},
title={A {B}ayesian network of eutrophication models for synthesis, prediction, and uncertainty analysis},
journal={Ecological Modelling},
volume={173},
number={2-3},
pages={219-239}
}
@article{Borsuk01,
author={M. E. Borsuk and C. A. Stow and Leuttich, Jr., R. A. and H. W. Pearl and J. L. Pinckney},
year={2001},
title={Modelling oxygen dynamics in an intermittently stratified estuary: Estimation of process rates using field data},
journal={Estuarine, Coastal and Shelf Science},
volume={52},
number={1},
pages={33-49}
}
@incollection{Bowden06,
author={G. J. Bowden and G. C. Dandy and H. R. Maier},
editor={F. Recknagel},
year={2006},
title={An evaluation of methods for the selection of inputs for an artificial neural network based river model},
booktitle={Ecological Informatics: Scope, Techniques and Applications},
publisher={Springer-Verlag},
edition={2nd},
address={Berlin, Germany},
pages={275-292}
}
@article{Bowes09,
author={M. J. Bowes and J. T. Smith and C. Neal},
year={2009},
title={The value of high resolution nutrient monitoring: a case study of the {R}iver {F}rome, {D}orset, {UK}},
journal={Journal of Hydrology},
volume={378},
number={},
pages={82-96}
}
@article{Boyer02,
author={E. W. Boyer and C. L. Goodale and N. A. Jaworski and R. W. Howarth},
year={2002},
title={Anthropogenic nitrogen sources and relationships to riverine nitrogen export in the northeastern {U.S.A.}},
journal={Biogeochemistry},
volume={57},
number={1},
pages={137-169}
}
@article{Brabec02,
author={E. Brabec and S. Schulte and P. L. Richards},
year={2002},
title={Impervious surfaces and water quality: {A} review of current literature and its implications for watershed planning},
journal={Journal of Planning Literature},
volume={16},
number={4},
pages={499-514}
}
@article{Brauns11,
author={M. Brauns and B. G\"{u}cker and C. Wagner and X. F. Garcia and N. Walz and M. T. Pusch},
year={2011},
title={Human lakeshore development alters the structure and trophic basis of littoral food webs},
journal={Journal of Applied Ecology},
volume={48},
number={4},
pages={916-925}
}
@book{Breiman84,
author={L. Breiman and J. H. Friedman and R. A. Olshen and C. J. Stone},
year={1984},
title={Classification and Regression Trees},
publisher={Wadsworth International Group},
address={Belmont, California},
pages={358}
}
@article{Breiman01,
author={L. Breiman},
year={2001},
title={Random forests},
journal={Machine Learning},
volume={45},
pages={5-32}
}
@article{Breine04,
author={J. Breine and I. Simoens and P. Goethals and P. Quataert and D. Ercken and C. Van Liefferinghe and C. Belpaire},
year={2004},
title={A fish-based index of biotic integrity for upstream brooks in {F}landers ({B}elgium)},
journal={Hydrobiologia},
volume={522},
number={1-3},
pages={133-148}
}
@article{Brosse01,
author={S. Brosse and S. Lek and C. R. Townsend},
year={2001},
title={Abundance, diversity, and structure of freshwater invertebrates and fish communities: An artificial neural network approach},
journal={New Zealand Journal of Marine and Freshwater Research},
volume={35},
number={1},
pages={135-145}
}
@article{Brun01,
author={R. Brun and P. Reichert and H. R. K\"{u}nsch},
year={2001},
title={Practical identifiability analysis of large environmental simulation models},
journal={Water Resources Research},
volume={37},
number={4},
pages={1015-1030}
}
@article{Bryan92,
author={M. D. Bryan and D. L. Scarnecchia},
year={1992},
title={Species richness, composition, and abundance of fish larvae and juveniles inhabiting natural and developed shorelines of a glacial {I}owa lake},
journal={Environmental Biology of Fishes},
volume={35},
number={4},
pages={329-341}
}
@article{Bulthius95,
author={D. A. Bulthius},
year={1995},
title={Distribution of seagrasses in a north {P}uget {S}ound estuary - {P}adilla {B}ay, {W}ashington, {USA}},
journal={Aquatic Botany},
volume={50},
number={1},
pages={99-105}
}
@article{Burdick99,
author={D. M. Burdick and F. T. Short},
year={1999},
title={The effects of boat docks on eelgrass beds in coastal waters of {M}assachusetts},
journal={Environmental Management},
volume={23},
number={2},
pages={231-240}
}
@article{Burke97,
author={L. Burke and J. P. Ignizio},
year={1997},
title={A practical overview of neural networks},
journal={Journal of Intelligent Manufacturing},
volume={8},
number={3},
pages={157-165}
}
@book{Burrough98,
author={P. A. Burrough and R. A. McDonnell},
year={1998},
title={Principles of Geographical Information Systems},
publisher={Oxford University Press},
address={New York, New York},
edition={second},
pages={356}
}
@article{Butler08,
author={R. G. Butler and P. G. {deMaynadier}},
year={2008},
title={The significance of littoral and shoreline habitat integrity to the conservation of lacustrine damselflies ({O}donata)},
journal={Journal of Insect Conservation},
volume={12},
number={1},
pages={23-36}
}
@article{Byrd95,
author={R. H. Byrd and P. Lu and J. Nocedal and C. Zhu},
year={1995},
title={A limited memory algorithm for bound constrained optimization},
journal={SIAM Journal on Scientific Computing},
volume={16},
number={5},
pages={1190-1208}
}
@article{Cade03,
author={B. S. Cade and B. R. Noon},
year={2003},
title={A gentle introduction to quantile regression for ecologists},
journal={Frontiers in Ecology and the Environment},
volume={1},
number={8},
pages={412-420}
}
@article{Cairns01,
author={D. M. Cairns},
year={2001},
title={A comparison of methods for predicting vegetation type},
journal={Plant Ecology},
volume={156},
number={1},
pages={3-18}
}
@incollection{Caffrey16,
author={J. M. Caffrey and M. C. Murrell},
editor={P. M. Glibert and T. M. Kana},
year={2016},
title={A historical perspective on eutrophication in the {P}ensacola {B}ay {E}stuary, {FL}, {USA}},
booktitle={Aquatic Microbial Ecology and Biogeochemistry: A Dual Perspective},
publisher={Springer International Publishing},
address={Switzerland},
pages={199-213}
}
@article{Caffrey03,
author={J. M. Caffrey},
year={2003},
title={Production, respiration and net ecosystem metabolism in {U.S.} estuaries},
journal={Environmental Monitoring and Assessment},
volume={81},
number={1-3},
pages={207-219}
}
@article{Caffrey04,
author={J. M. Caffrey},
year={2004},
title={Factors controlling net ecosystem metabolism in {U.S.} estuaries},
journal={Estuaries},
volume={27},
number={1},
pages={90-101}
}
@article{Caffrey14,
author={J. M. Caffrey and M. C. Murrell and K. S. Amacker and J. Harper and S. Phipps and M. Woodrey},
year={2013},
title={Seasonal and inter-annual patterns in primary production, respiration and net ecosystem metabolism in 3 estuaries in the northeast {G}ulf of {M}exico},
journal={Estuaries and Coasts},
volume={37},
number={1},
pages={222-241}
}
@article{Camacho14a,
author={R. A. Camacho and J. L. Martin and B. Watson and M. J. Paul and L. Zheng and J. B. Stribling},
year={2014},
title={Modeling the factors controlling phytoplankton in the {S}t. {L}ouis {B}ay estuary, {M}ississippi and evaluating estuarine responses to nutrient load modifications},
journal={Journal of Environmental Engineering},