update paraview to 5.13.1, add adios2, h5py and conduit

Author: biddisco

config.yaml

@@ -274,10 +274,10 @@ uenvs:
         daint: [gh200]
       develop: False
   paraview:
-    "5.13.0":
+    "5.13.1":
       recipes:
-        gh200: 5.13.0/gh200
-        zen2: 5.13.0/zen2
+        gh200: 5.13.1/gh200
+        zen2: 5.13.1/zen2
       deploy:
         daint: [gh200]
         eiger: [zen2]

recipes/paraview/5.13.0/gh200/cache-config.yaml renamed to recipes/paraview/5.13.1/gh200/cache-config.yaml

@@ -93,6 +93,7 @@ paraview-gh200-egl-cuda:
   - py-matplotlib
   - py-mpi4py
   - py-cftime
+  - py-h5py
 
   # raytracing in VTK/ParaView
   - [email protected] ~mpi +denoiser +volumes ~apps ~glm
@@ -137,3 +138,4 @@ paraview-python:
   - py-matplotlib
   - py-mpi4py
   - py-cftime
+  - py-h5py

recipes/paraview/5.13.0/gh200/compilers.yaml renamed to recipes/paraview/5.13.1/gh200/compilers.yaml

@@ -68,7 +68,7 @@ SCRATCH=/capstor/scratch/cscs/biddisco
 
 # setup paths for src/build/install
 PARAVIEW_VERSION_MAIN=5.13
-PARAVIEW_VERSION_FULL=5.13.0
+PARAVIEW_VERSION_FULL=5.13.1
 PARAVIEW_SRC_DIR=$SRC_ROOT/ParaView-v${PARAVIEW_VERSION_FULL}
 PARAVIEW_BINARY_DIR=$BUILD_ROOT/paraview
 PARAVIEW_INSTALL_DIR=$mount_path/ParaView-$PARAVIEW_VERSION_MAIN
@@ -98,8 +98,8 @@ if [[ $CLONE_PARAVIEW == "true" ]]; then
     cd $PARAVIEW_SRC_DIR/VTK/ThirdParty/vtkm/vtkvtkm/vtk-m
     git checkout v2.1.0
 else
-    # wget https://www.paraview.org/files/v${PARAVIEW_VERSION_MAIN}/ParaView-v${PARAVIEW_VERSION_FULL}.tar.xz
-    cp $SCRATCH/uenv-data/ParaView-v${PARAVIEW_VERSION_FULL}.tar.xz .
+    wget https://www.paraview.org/files/v${PARAVIEW_VERSION_MAIN}/ParaView-v${PARAVIEW_VERSION_FULL}.tar.xz
+    # cp $SCRATCH/uenv-data/ParaView-v${PARAVIEW_VERSION_FULL}.tar.xz .
     tar --directory $SRC_ROOT -xf ParaView-v${PARAVIEW_VERSION_FULL}.tar.xz
 fi
 
@@ -139,6 +139,7 @@ cmake -G Ninja \
     -DPARAVIEW_PLUGIN_ENABLE_pvNVIDIAIndeX=ON               \
     -DPARAVIEW_PLUGIN_AUTOLOAD_pvNVIDIAIndeX=ON             \
     `# Plugin related options`                              \
+    -DPARAVIEW_ENABLE_ADIOS2=ON                             \
     -DPARAVIEW_PLUGIN_ENABLE_CDIReader=ON                   \
     -DPARAVIEW_PLUGIN_ENABLE_NetCDFTimeAnnotationPlugin=ON  \
     -DPARAVIEW_ENABLE_FIDES:BOOL=ON                         \

recipes/paraview/5.13.0/gh200/config.yaml renamed to recipes/paraview/5.13.1/gh200/config.yaml

@@ -0,0 +1,10 @@
+--- a/src/libs/blueprint/conduit_blueprint_mpi_mesh_parmetis.cpp	2022-01-13 12:48:31.000000000 -0800
++++ b/src/libs/blueprint/conduit_blueprint_mpi_mesh_parmetis.cpp	2022-01-26 14:18:32.274814000 -0800
+@@ -22,6 +22,7 @@
+ 
+ #include <parmetis.h>
+ 
++#include <algorithm>
+ #include <unordered_map>
+ 
+ //-----------------------------------------------------------------------------

recipes/paraview/5.13.0/gh200/environments.yaml renamed to recipes/paraview/5.13.1/gh200/environments.yaml

@@ -0,0 +1,14 @@
+diff -u -r -N a/src/blt/cmake/SetupCompilerOptions.cmake b/src/blt/cmake/SetupCompilerOptions.cmake
+--- a/src/blt/cmake/SetupCompilerOptions.cmake	2020-08-26 11:58:24.000000000 +0900
++++ b/src/blt/cmake/SetupCompilerOptions.cmake	2020-08-26 13:31:04.000000000 +0900
+@@ -206,7 +206,9 @@
+ 
+ endif()
+ 
+-
++set(CMAKE_Fortran_MODDIR_FLAG -M)
++set(CMAKE_Fortran_FLAGS_RELWITHDEBINFO "-O2 -g -DNDEBUG")
++set(CMAKE_SHARED_LIBRARY_LINK_CXX_FLAGS "--linkfortran")
+ 
+ ################################
+ # RPath Settings