Skip to content

Releases: eweitz/ideogram

v1.35.0

12 Apr 11:58
31c0d8c

Choose a tag to compare

This improves the related genes kit:

  • Instantly find interacting genes (#295)
  • Instant gene description (#299)
  • Instantly fetch paralogs (#300)
  • Smooth exploration: hide tooltip after clicking annotation (#298)
  • Refine annotation labels: better algorithms for sorting and overlap (#296)
  • Prototype: enable related genes kit to show all genes in pathway (#297)

v1.34.0

15 Feb 13:26

Choose a tag to compare

This improves the related genes kit:

  • Refine interaction detail, fix misdirected group interactions, test (#292)
  • Summarize interactions by direction (#293)
  • Instantly summarize interaction direction (#294)

v1.33.0

05 Jan 13:57

Choose a tag to compare

This refines the related genes kit:

  • Report more detailed pathway interactions (#289)
  • Reduce label noise, omit accessions, fix search bug in Gene Hints (#290)
  • Fix duplicative description for paralogs (#291)

v1.32.0

01 Dec 13:54

Choose a tag to compare

  • Orthology upgrade: more robust, faster, with more organisms (#279)
  • Enable custom colors for chromosome arms and centromeres (#280)
  • Enrich gene cache: Cache API, slim data, mouse, provenance (#284)
  • Speed up gene search in "Related genes" (#285)
  • Automate gene cache population, expand from 2 to 14 organisms (#286)
  • Fix legend name placement (#287)
  • Prioritize popular genes, reduce overcrowding while increasing threshold (#288)

v1.31.0

07 Jun 12:40

Choose a tag to compare

  • Add basic gene cache (#272)
  • Fix organism switch, show error message, update screenshot for "Related genes" (#273)
  • Use gene cache to detect if interaction node is gene (#274)

v1.30.0

11 May 21:19

Choose a tag to compare

  • Support handling brush end event (#264)
  • Support remote dataDir for custom organisms (#266)
  • Throw informative error upon searching unknown gene in "Related genes" kit (#267)
  • Throw warning instead of error for unknown / custom organism (#268)
  • Support changing font family (#269)
  • Ensure labels for higher-ranked annotations appear in front (#271)

v1.29.0

01 Dec 04:42

Choose a tag to compare

  • Sort annotations on Roman-numeral chromosomes, like yeast (#253)
  • Report duplicate chromosomes in raw annotations (#253)
  • Demonstrate tooltip modification in ACMG 59 example (#254)
  • Refine layering and outlines for related annotations (#256)
  • Show highly cited genes by default in "Related genes" kit (#258)
  • Enable optional "significance" column for cited genes (#261)

v1.28.0

28 Oct 12:08

Choose a tag to compare

  • Make annotation labels interactive, polish label UX and tooltip analytics (#252)
  • Enable many annotation labels without overlap (#249)
  • Enable annotation labels (#248)
  • Enable richer analytics for related genes (#247)

v1.27.0

15 Oct 12:59

Choose a tag to compare

  • Refine handling of Ensembl outages in related genes kit (#246)

v1.26.0

13 Oct 03:56

Choose a tag to compare

Improvements for the Related Genes kit:

  • Speed up search via parallelization (#243)
  • Further speed up and polish UI (#244)
  • Disable vertical scroll (#242)
  • Enable clients to tailor and analyze (#245)