Skip to content

Commit 0763745

Browse files
authored
Merge pull request scverse#6 from ewels/feat/sam-rg-line
feat: add `--outSAMattrRGline` with `@RG` header and `RG:Z` tags
2 parents e67864d + e306046 commit 0763745

4 files changed

Lines changed: 369 additions & 40 deletions

File tree

src/io/bam.rs

Lines changed: 6 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -125,9 +125,10 @@ mod tests {
125125
let read_qual = vec![30, 30, 30, 30];
126126

127127
// Build record using SAM builder
128-
let record =
129-
crate::io::sam::SamWriter::build_unmapped_record(read_name, &read_seq, &read_qual)
130-
.unwrap();
128+
let record = crate::io::sam::SamWriter::build_unmapped_record(
129+
read_name, &read_seq, &read_qual, None,
130+
)
131+
.unwrap();
131132

132133
let result = writer.write_batch(&[record]);
133134
assert!(result.is_ok(), "Writing unmapped read should succeed");
@@ -204,12 +205,14 @@ mod tests {
204205
"read1",
205206
&[0, 1, 2, 3],
206207
&[30, 30, 30, 30],
208+
None,
207209
)
208210
.unwrap(),
209211
crate::io::sam::SamWriter::build_unmapped_record(
210212
"read2",
211213
&[0, 1, 2, 3],
212214
&[30, 30, 30, 30],
215+
None,
213216
)
214217
.unwrap(),
215218
];

0 commit comments

Comments
 (0)