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Makefile
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358 lines (310 loc) · 18.1 KB
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.PHONY: all quicktests forwardtests comparisontests synth_retrievals hd189 oneline fewline multiline abundance broadening blending multicia isothermal energycons plots fin clean
all: bart linelists oneline fewline multiline broadening abundance blending multicia isothermal energycons comparisontests plots fin
quicktests: oneline fewline multiline broadening abundance blending multicia plots fin
forwardtests: oneline fewline multiline broadening abundance blending multicia isothermal energycons plots fin
comparisontests: comparison_tli comparison_iso comparison_noinv comparison_inv comparison_BarstowEtal BarstowEtal_OSF comparison_plots fin
synthretrievals: retrieval_tli retrieval_iso_e retrieval_iso_t retrieval_noinv_e retrieval_noinv_t retrieval_inv_e retrieval_inv_t retrieval_BarstowEtal_NEMESIS_clear retrieval_BarstowEtal_NEMESIS_cloud retrieval_BarstowEtal_CHIMERA_clear retrieval_BarstowEtal_CHIMERA_cloud retrieval_BarstowEtal_TauREx_clear retrieval_BarstowEtal_TauREx_cloud fin
BarstowEtalretrievals: retrieval_tli retrieval_BarstowEtal_NEMESIS_clear retrieval_BarstowEtal_NEMESIS_cloud retrieval_BarstowEtal_CHIMERA_clear retrieval_BarstowEtal_CHIMERA_cloud retrieval_BarstowEtal_TauREx_clear retrieval_BarstowEtal_TauREx_cloud fin
hd189: hd189_tli hd189_retrieval fin
bart:
@if [ ! -d "../BART" ]; then \
@echo "\nCloning BART..."; \
git clone --recursive https://github.com/exosports/BART ../BART/; \
@cd ../BART && git checkout a08ee09c67fc7c571efe51b55caba104720e0db2; \
echo "Finished cloning BART to a directory parallel to BARTTest.\n"; \
else \
echo "BART already exists in a directory parallel to BARTTest.\n"; \
fi
@echo "Compiling BART..."
@cd ../BART/modules/transit && make
@cd ../BART/modules/MCcubed && make
@echo "Finished compiling BART.\n"
linelists:
@echo "Downloading line lists...\n"
@cd tests/00inputs/par/ &&\
wget https://hitran.org/hitemp/data/bzip2format/05_HITEMP2019.par.bz2 &&\
wget https://hitran.org/hitemp/data/bzip2format/06_HITEMP2020.par.bz2 &&\
wget https://zenodo.org/record/3768504/files/CO2_exomol_ucl4000_0.5-500.0um_100-3500K_threshold_0.01_lbl.dat &&\
wget https://zenodo.org/record/3768504/files/H2O_exomol_pokazatel_0.24-500.0um_100-3500K_threshold_0.01_lbl.dat
@echo "Extracting archives...\n"
@cd tests/00inputs/par/ &&\
wget -i wget-list_HITEMP-H2O.txt &&\
wget -i wget-list_HITEMP-CO2.txt &&\
wget -i wget-list_HITEMP-CO.txt &&\
wget -i wget-list_HITRAN-CH4.txt &&\
wget -i wget-list_HITRAN-NH3.txt &&\
wget -i wget-list_HITRAN-H2.txt &&\
unzip '01_*HITEMP2010.zip' &&\
unzip '02_*HITEMP2010.zip' &&\
unzip '05_*HITEMP2010.zip' &&\
unzip '06_hit12.zip' &&\
unzip '11_hit12.zip' &&\
unzip '45_hit12.zip' &&\
bunzip2 05_HITEMP2019.par.bz2 &&\
bunzip2 06_HITEMP2020.par.bz2 &&\
rm -f *.zip
@echo "Finished downloading line lists.\n"
oneline:
@echo "Running oneline test...\n"
@cd tests/f01oneline/ &&\
../../../BART/modules/transit/pylineread/src/pylineread.py -c \
oneline.plc &&\
../../../BART/modules/transit/transit/transit -c oneline_emission.trc
@echo "oneline test complete.\n"
fewline:
@echo "Running fewline test...\n"
@cd tests/f02fewline/ &&\
../../../BART/modules/transit/pylineread/src/pylineread.py -c \
fewline.plc &&\
../../../BART/modules/transit/transit/transit -c \
./fewline_emission.trc &&\
../../../BART/modules/transit/transit/transit -c \
./fewline_transmission.trc
@echo "fewline test complete.\n"
multiline:
@echo "Running multiline test...\n"
@cd tests/f03multiline/ &&\
../../../BART/modules/transit/pylineread/src/pylineread.py -c \
multiline.plc &&\
../../../BART/modules/transit/transit/transit -c \
multiline_emission.trc &&\
../../../BART/modules/transit/transit/transit -c \
multiline_transmission.trc
@echo "multiline test complete.\n"
broadening:
@echo "Running broadening test...\n"
@cd tests/f04broadening/ &&\
../../../BART/modules/transit/pylineread/src/pylineread.py -c \
broadening.plc &&\
../../../BART/modules/transit/transit/transit -c broadening_emission.trc
@cd lib/ && ./voigtcomp.py
@echo "broadening test complete.\n"
abundance:
@echo "Running abundance test...\n"
@cd tests/f05abundance/ &&\
../../../BART/modules/transit/pylineread/src/pylineread.py -c \
abundance.plc &&\
../../../BART/modules/transit/transit/transit -c \
abundance_0_emission.trc &&\
../../../BART/modules/transit/transit/transit -c \
abundance_1e-4_emission.trc &&\
../../../BART/modules/transit/transit/transit -c \
abundance_2e-4_emission.trc &&\
../../../BART/modules/transit/transit/transit -c \
abundance_3e-4_emission.trc &&\
../../../BART/modules/transit/transit/transit -c \
abundance_4e-4_emission.trc &&\
../../../BART/modules/transit/transit/transit -c \
abundance_5e-4_emission.trc &&\
../../../BART/modules/transit/transit/transit -c \
abundance_6e-4_emission.trc &&\
../../../BART/modules/transit/transit/transit -c \
abundance_7e-4_emission.trc &&\
../../../BART/modules/transit/transit/transit -c \
abundance_8e-4_emission.trc &&\
../../../BART/modules/transit/transit/transit -c \
abundance_9e-4_emission.trc &&\
../../../BART/modules/transit/transit/transit -c \
abundance_1e-3_emission.trc
@cd ./lib/ && ./abuncomp.py
@echo "abundance test complete.\n"
blending:
@echo "Running blending test...\n"
@cd tests/f06blending/ &&\
../../../BART/modules/transit/pylineread/src/pylineread.py -c \
blending.plc &&\
../../../BART/modules/transit/transit/transit -c blending_emission.trc
@echo "blending test complete.\n"
multicia:
@echo "Running multicia test...\n"
@cd tests/f07multicia/ &&\
../../../BART/modules/transit/pylineread/src/pylineread.py -c \
multicia.plc &&\
../../../BART/modules/transit/transit/transit -c noCIA_emission.trc &&\
../../../BART/modules/transit/transit/transit -c oneCIA_emission.trc &&\
../../../BART/modules/transit/transit/transit -c twoCIA_emission.trc
@echo "multicia test complete.\n"
isothermal:
@echo "Running isothermal test...\n"
@if [ ! -f ./tests/00inputs/TLI/CH4_CO_CO2_H2O_full_1-8um.tli ]; then \
cd tests/f08isothermal/ &&\
../../../BART/modules/transit/pylineread/src/pylineread.py -c \
isothermal.plc; \
fi
@cd tests/f08isothermal/ &&\
../../../BART/modules/transit/transit/transit -c isothermal_emission.trc
@echo "isothermal test complete. \n"
energycons:
@echo "Running energy conservation test...\n"
@if [ ! -f ./tests/00inputs/TLI/CH4_CO_CO2_H2O_full_1-8um.tli ]; then \
cd tests/f09energycons/ &&\
../../../BART/modules/transit/pylineread/src/pylineread.py -c \
energycons.plc; \
fi
@cd tests/f09energycons/ &&\
../../../BART/modules/transit/transit/transit -c \
energycons_1_emission.trc &&\
../../../BART/modules/transit/transit/transit -c \
energycons_2_emission.trc &&\
../../../BART/modules/transit/transit/transit -c \
energycons_5_emission.trc &&\
../../../BART/modules/transit/transit/transit -c \
energycons_10_emission.trc
@cd ./lib/ && ./energycons.py
@echo "energy conservation test complete. \n"
comparison_tli:
@echo "Generating TLI file for comparison tests...\n"
@if [ ! -f ./tests/00inputs/TLI/CH4_CO_CO2_H2O_NH3_H2_1-11um.tli ]; then \
cd tests/c01hjcleariso/ &&\
../../../BART/modules/transit/pylineread/src/pylineread.py -c \
comparison.plc; \
echo "TLI file generated for comparison tests.\n"; \
else \
echo "TLI file already exists.\n"; \
fi
comparison_iso:
@echo "Running comparison test, isothermal atmosphere: \n"
@cd tests/c01hjcleariso/ &&\
../../../BART/modules/transit/transit/transit -c iso_emission.trc &&\
../../../BART/modules/transit/transit/transit -c iso_transmission.trc
@echo "Isothermal comparison test complete. \n"
comparison_noinv:
@echo "Running comparison test, noninverted atmosphere: \n"
@cd tests/c02hjclearnoinv/ &&\
../../../BART/modules/transit/transit/transit -c noinv_emission.trc &&\
../../../BART/modules/transit/transit/transit -c \
noinv_transmission.trc
@echo "Noninverted comparison test complete. \n"
comparison_inv:
@echo "Running comparison test, inverted atmosphere: \n"
@cd tests/c03hjclearinv/ &&\
../../../BART/modules/transit/transit/transit -c inv_emission.trc &&\
../../../BART/modules/transit/transit/transit -c inv_transmission.trc
@echo "Inverted comparison test complete. \n"
comparison_BarstowEtal:
@echo "Running comparison test, Barstow et al. (2020) cases: \n"
@cd tests/c04hjclearisoBarstowEtal/ &&\
../../../BART/modules/transit/pylineread/src/pylineread.py -c \
pyline_BarstowEtal_CO.plc &&\
../../../BART/modules/transit/pylineread/src/pylineread.py -c \
pyline_BarstowEtal_model0_H2O_CO.plc &&\
../../../BART/modules/transit/transit/transit -c \
BarstowEtal_CO_1e-4_1000K.trc &&\
../../../BART/modules/transit/transit/transit -c \
BarstowEtal_CO_1e-4_1500K.trc &&\
../../../BART/modules/transit/transit/transit -c \
BarstowEtal_CO_1e-5_1500K.trc &&\
../../../BART/modules/transit/transit/transit -c BarstowEtal_model0.trc
@cd tests/c05hjcloudisoBarstowEtal/ &&\
../../../BART/modules/transit/transit/transit -c BarstowEtal_model1.trc
@echo "Barstow et al. (2020) comparison test cases complete. \n"
BarstowEtal_OSF:
@if [ ! -d "../BarstowEtal2020" ]; then \
@echo "\nCloning Barstow et al. (2020) OSF repo..." \
osf -p 5hg6y clone .; \
echo "Finished cloning Barstow et al. (2020) OSF repo to a directory parallel to BARTTest.\n"; \
else \
echo "Barstow et al. (2020) OSF repo already exists in a directory parallel to BARTTest.\n"; \
fi
comparison_plots:
@echo "Making plots for comparison test...\n"
@cd ./lib/ && ./comparison.py
retrieval_tli:
@echo "Generating TLI file for synthetic retrieval tests...\n"
@if [ ! -f ./tests/00inputs/TLI/CH4_CO_CO2_H2O_NH3_H2_1-11um.tli ]; then \
cd tests/s01hjcleariso/ &&\
../../../BART/modules/transit/pylineread/src/pylineread.py -c \
retrievals.plc; \
echo "TLI file generated for synthetic retrieval tests.\n"; \
else \
echo "TLI file already exists.\n"; \
fi
retrieval_iso_e:
@echo "Running retrieval, isothermal atmosphere, eclipse: \n"
@cd tests/s01hjcleariso/ &&\
../../../BART/BART.py -c iso_emission.brt
retrieval_iso_t:
@echo "Running retrieval, isothermal atmosphere, transit: \n"
@cd tests/s01hjcleariso/ &&\
../../../BART/BART.py -c iso_transmission.brt
retrieval_noinv_e:
@echo "Running retrieval, noninverted atmosphere: \n"
@cd tests/s02hjclearnoinv/ &&\
../../../BART/BART.py -c noinv_emission.brt
retrieval_noinv_t:
@echo "Running retrieval, noninverted atmosphere: \n"
@cd tests/s02hjclearnoinv/ &&\
../../../BART/BART.py -c noinv_transmission.brt
retrieval_inv_e:
@echo "Running retrieval, inverted atmosphere: \n"
@cd tests/s03hjclearinv/ &&\
../../../BART/BART.py -c inv_emission.brt
retrieval_inv_t:
@echo "Running retrieval, inverted atmosphere: \n"
@cd tests/s03hjclearinv/ &&\
../../../BART/BART.py -c inv_transmission.brt
retrieval_BarstowEtal_NEMESIS_clear:
@echo "Running retrieval, Barstow et al. (2020) NEMESIS Model 0: \n"
@cd tests/s04hjclearisoBarstowEtal/ &&\
../../../BART/BART.py -c BarstowEtal_model0_nemesis.brt
retrieval_BarstowEtal_NEMESIS_cloud:
@echo "Running retrieval, Barstow et al. (2020) NEMESIS Model 1: \n"
@cd tests/s05hjcloudisoBarstowEtal/ &&\
../../../BART/BART.py -c BarstowEtal_model1_nemesis.brt
retrieval_BarstowEtal_CHIMERA_clear:
@echo "Running retrieval, Barstow et al. (2020) CHIMERA Model 0: \n"
@cd tests/s04hjclearisoBarstowEtal/ &&\
../../../BART/BART.py -c BarstowEtal_model0_chimera.brt
retrieval_BarstowEtal_CHIMERA_cloud:
@echo "Running retrieval, Barstow et al. (2020) CHIMERA Model 1: \n"
@cd tests/s05hjcloudisoBarstowEtal/ &&\
../../../BART/BART.py -c BarstowEtal_model1_chimera.brt
retrieval_BarstowEtal_TauREx_clear:
@echo "Running retrieval, Barstow et al. (2020) Tau-REx Model 0: \n"
@cd tests/s04hjclearisoBarstowEtal/ &&\
../../../BART/BART.py -c BarstowEtal_model0_taurex.brt
retrieval_BarstowEtal_TauREx_cloud:
@echo "Running retrieval, Barstow et al. (2020) Tau-REx Model 1: \n"
@cd tests/s05hjcloudisoBarstowEtal/ &&\
../../../BART/BART.py -c BarstowEtal_model1_taurex.brt
hd189_tli:
@echo "Running retrieval, HD 189733 b: \n"
@cd tests/r01hd189733b/ &&\
../../../BART/modules/transit/pylineread/src/pylineread.py -c \
HD189733b.plc
hd189_opacity:
@echo "Generating opacity table for HD 189733 b retrieval: \n"
@cd tests/r01hd189733b/ &&\
../../../BART/BART.py -c HD189733b.brt --justOpacity
hd189_retrieval:
@echo "Running retrieval, HD 189733 b: \n"
@cd tests/r01hd189733b/ &&\
../../../BART/BART.py -c HD189733b.brt
plots:
@echo "Making plots..."
@cd lib/ && ./makeplots.py
@echo "Plotting complete.\n"
retrievalplots:
@echo "Making synthetic retrieval plots..."
@cd lib/ && ./retrievalplots.py && ./retrievalplots_BarstowEtal.py
@echo "Plotting complete.\n"
fin:
@echo "Done!\n"
clean:
@echo "Deleting files created from running BARTTest.\n"
@echo "Deleting .pyc files..."
@cd lib/ &&\
rm -f *.pyc
@echo "Deleting BART output files..."
@cd code-output/01BART/ &&\
rm -rf ./*
@echo "Deleting BART results..."
@cd results/01BART/ &&\
rm -rf ./*
@echo "Deleting downloaded line list files..."
@cd tests/00inputs/par/ &&\
rm -f 01* 02* 05* 06* 11* 45*
@echo "Deleting TLI files...\n"
@cd tests/00inputs/TLI/ &&\
rm -f *.tli
@echo "BARTTest is now back to its base state."