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ezrabruezrabru
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Fix bug writing away processed diffraction limited stacks
1 parent f131fb9 commit e86fa5f

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‎POLCAM-SR/POLCAM-SR.mlappinstall‎

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‎POLCAM-SR/POLCAM-SR.prj‎

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<deployment-project plugin="plugin.apptool" plugin-version="1.0">
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<configuration build-checksum="1958843674" file="/Users/ezrabruggeman/Documents/GitHub/POLCAM-SR/POLCAM-SR/POLCAM-SR.prj" location="/Users/ezrabruggeman/Documents/GitHub/POLCAM-SR/POLCAM-SR" name="POLCAM-SR" target="target.mlapps" target-name="Package App">
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<configuration build-checksum="3057018430" file="C:\Users\ezrab\Documents\GitHub\POLCAM-SR\POLCAM-SR\POLCAM-SR.prj" location="C:\Users\ezrab\Documents\GitHub\POLCAM-SR\POLCAM-SR" name="POLCAM-SR" target="target.mlapps" target-name="Package App">
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<param.appname>POLCAM-SR</param.appname>
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<param.authnamewatermark>Ezra Bruggeman</param.authnamewatermark>
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<param.email>eb758@cam.ac.uk</param.email>
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<param.company>Lee Lab, University of Cambridge</param.company>
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<param.icon>${PROJECT_ROOT}/POLCAM-SR_resources/icon_24.png</param.icon>
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<param.company>Chemistry Dept., University of Cambridge</param.company>
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<param.icon>${PROJECT_ROOT}\POLCAM-SR_resources\icon_24.png</param.icon>
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<param.icons>
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<file>${PROJECT_ROOT}/POLCAM-SR_resources/icon_48.png</file>
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<file>${PROJECT_ROOT}/POLCAM-SR_resources/icon_24.png</file>
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<file>${PROJECT_ROOT}/POLCAM-SR_resources/icon_16.png</file>
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<file>${PROJECT_ROOT}\POLCAM-SR_resources\icon_48.png</file>
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<file>${PROJECT_ROOT}\POLCAM-SR_resources\icon_24.png</file>
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<file>${PROJECT_ROOT}\POLCAM-SR_resources\icon_16.png</file>
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</param.icons>
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<param.summary>Application to process single-molecule and diffraction-limited polarisation camera image data</param.summary>
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<param.description>Process single-molecule and diffraction-limited polarisation camera data</param.description>
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<param.screenshot>/private/var/folders/6j/9pmd1ms95nn1t7d0_vmbff240000gn/T/tp4cd374a2_bde5_41dc_9102_e990c6d5b85a.png</param.screenshot>
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<param.version>1.2</param.version>
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<param.screenshot>C:\Users\ezrab\AppData\Local\Temp\tpf0cf930f_162f_4fc0_a6d9_3542383a330c.png</param.screenshot>
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<param.version>1.3</param.version>
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<param.products.name />
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<param.products.id />
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<param.products.version />
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<param.output />
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</unset>
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<fileset.main>
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<file>${PROJECT_ROOT}/POLCAM_SR.mlapp</file>
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<file>${PROJECT_ROOT}\POLCAM_SR.mlapp</file>
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</fileset.main>
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<fileset.depfun>
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<file>${PROJECT_ROOT}/dialog apps/DialogAppDriftCorrection.mlapp</file>
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<file>${PROJECT_ROOT}/dialog apps/DialogAppFiltering.mlapp</file>
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<file>${PROJECT_ROOT}/dialog apps/DialogAppImgDataDiffractionLimited.mlapp</file>
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<file>${PROJECT_ROOT}/dialog apps/DialogAppImgDataSingleMolecule.mlapp</file>
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<file>${PROJECT_ROOT}/dialog apps/DialogAppLocalisation.mlapp</file>
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<file>${PROJECT_ROOT}/dialog apps/DialogAppSettingsDiffractionLimited.mlapp</file>
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<file>${PROJECT_ROOT}/dialog apps/figures/DialogAppScatter.mlapp</file>
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<file>${PROJECT_ROOT}/lib/+Drift/correctDriftMMC.m</file>
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<file>${PROJECT_ROOT}/lib/+Drift/correctDriftRCC.m</file>
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<file>${PROJECT_ROOT}/lib/+Plot/+AnalyseMenu/plotLocalisationRateVsTime.m</file>
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<file>${PROJECT_ROOT}/lib/+Plot/+AnalyseMenu/plotSummaryHistograms.m</file>
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<file>${PROJECT_ROOT}/lib/+Plot/+FilteringApp/plot1DHistogram.m</file>
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<file>${PROJECT_ROOT}/lib/+Plot/+FilteringApp/plot2DHistogram.m</file>
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<file>${PROJECT_ROOT}/lib/+Plot/+FilteringApp/plotScatterPlot.m</file>
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<file>${PROJECT_ROOT}/lib/+Postprocessing/+Clustering/cluster_dbscan.m</file>
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<file>${PROJECT_ROOT}/lib/+Postprocessing/+Temporal/groupLocalisations.m</file>
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<file>${PROJECT_ROOT}/lib/+Postprocessing/+Temporal/temporalGrouping.m</file>
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<file>${PROJECT_ROOT}/lib/+Postprocessing/+Temporal/temporalLinking.m</file>
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<file>${PROJECT_ROOT}/lib/+Utils/+Colormaps/+cmocean/cmocean.m</file>
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<file>${PROJECT_ROOT}/lib/+Utils/getAverageIntensityProjectionFromPath.m</file>
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<file>${PROJECT_ROOT}/lib/+Utils/getMaximumIntensityProjectionFromPath.m</file>
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<file>${PROJECT_ROOT}/lib/+Utils/getMinimumIntensityProjectionFromPath.m</file>
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<file>${PROJECT_ROOT}/lib/+Utils/getOrderedImageFilelist_MicroManager.m</file>
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<file>${PROJECT_ROOT}/lib/+Utils/getOrderedImageFilelist_ThorCam.m</file>
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<file>${PROJECT_ROOT}/lib/+Utils/getSumIntensityProjectionFromPath.m</file>
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<file>${PROJECT_ROOT}/lib/+Utils/readJsonFile.m</file>
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<file>${PROJECT_ROOT}/lib/+Utils/readTiffStack.m</file>
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<file>${PROJECT_ROOT}/lib/+Utils/sortFilesAscending.m</file>
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<file>${PROJECT_ROOT}/lib/+Utils/writeJsonFile.m</file>
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<file>${PROJECT_ROOT}/lib/+Utils/writeTifStack.m</file>
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<file>${PROJECT_ROOT}/lib/Camera.m</file>
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<file>${PROJECT_ROOT}/lib/Microscope.m</file>
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<file>${PROJECT_ROOT}/lib/Process.m</file>
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<file>${PROJECT_ROOT}\dialog apps\DialogAppDriftCorrection.mlapp</file>
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<file>${PROJECT_ROOT}\dialog apps\DialogAppFiltering.mlapp</file>
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<file>${PROJECT_ROOT}\dialog apps\DialogAppImgDataDiffractionLimited.mlapp</file>
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<file>${PROJECT_ROOT}\dialog apps\DialogAppImgDataSingleMolecule.mlapp</file>
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<file>${PROJECT_ROOT}\dialog apps\DialogAppLocalisation.mlapp</file>
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<file>${PROJECT_ROOT}\dialog apps\DialogAppSettingsDiffractionLimited.mlapp</file>
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<file>${PROJECT_ROOT}\dialog apps\figures\DialogAppScatter.mlapp</file>
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<file>${PROJECT_ROOT}\lib\+Drift\correctDriftMMC.m</file>
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<file>${PROJECT_ROOT}\lib\+Drift\correctDriftRCC.m</file>
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<file>${PROJECT_ROOT}\lib\+Plot\+AnalyseMenu\plotLocalisationRateVsTime.m</file>
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<file>${PROJECT_ROOT}\lib\+Plot\+AnalyseMenu\plotSummaryHistograms.m</file>
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<file>${PROJECT_ROOT}\lib\+Plot\+FilteringApp\plot1DHistogram.m</file>
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<file>${PROJECT_ROOT}\lib\+Plot\+FilteringApp\plot2DHistogram.m</file>
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<file>${PROJECT_ROOT}\lib\+Plot\+FilteringApp\plotScatterPlot.m</file>
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<file>${PROJECT_ROOT}\lib\+Postprocessing\+Clustering\cluster_dbscan.m</file>
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<file>${PROJECT_ROOT}\lib\+Postprocessing\+Temporal\groupLocalisations.m</file>
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<file>${PROJECT_ROOT}\lib\+Postprocessing\+Temporal\temporalGrouping.m</file>
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<file>${PROJECT_ROOT}\lib\+Postprocessing\+Temporal\temporalLinking.m</file>
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<file>${PROJECT_ROOT}\lib\+Utils\+Colormaps\+cmocean\cmocean.m</file>
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<file>${PROJECT_ROOT}\lib\+Utils\getAverageIntensityProjectionFromPath.m</file>
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<file>${PROJECT_ROOT}\lib\+Utils\getMaximumIntensityProjectionFromPath.m</file>
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<file>${PROJECT_ROOT}\lib\+Utils\getMinimumIntensityProjectionFromPath.m</file>
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<file>${PROJECT_ROOT}\lib\+Utils\getOrderedImageFilelist_MicroManager.m</file>
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<file>${PROJECT_ROOT}\lib\+Utils\getOrderedImageFilelist_ThorCam.m</file>
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<file>${PROJECT_ROOT}\lib\+Utils\getSumIntensityProjectionFromPath.m</file>
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<file>${PROJECT_ROOT}\lib\+Utils\readJsonFile.m</file>
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<file>${PROJECT_ROOT}\lib\+Utils\readTiffStack.m</file>
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<file>${PROJECT_ROOT}\lib\+Utils\sortFilesAscending.m</file>
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<file>${PROJECT_ROOT}\lib\+Utils\writeJsonFile.m</file>
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<file>${PROJECT_ROOT}\lib\+Utils\writeTifStack.m</file>
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<file>${PROJECT_ROOT}\lib\Camera.m</file>
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<file>${PROJECT_ROOT}\lib\Microscope.m</file>
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<file>${PROJECT_ROOT}\lib\Process.m</file>
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</fileset.depfun>
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<fileset.resources>
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<file>${PROJECT_ROOT}/docs</file>
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<file>${PROJECT_ROOT}/plugins</file>
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<file>${PROJECT_ROOT}\docs</file>
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<file>${PROJECT_ROOT}\plugins</file>
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</fileset.resources>
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<fileset.package />
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<build-deliverables>
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<file location="/Users/ezrabruggeman/Documents/GitHub/POLCAM-SR" name="POLCAM-SR" optional="false">/Users/ezrabruggeman/Documents/GitHub/POLCAM-SR/POLCAM-SR</file>
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<file location="C:\Users\ezrab\Documents\GitHub\POLCAM-SR" name="POLCAM-SR" optional="false">C:\Users\ezrab\Documents\GitHub\POLCAM-SR\POLCAM-SR</file>
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</build-deliverables>
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<workflow />
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<matlab>
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<root>/Applications/MATLAB_R2023a.app</root>
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<root>C:\Program Files\MATLAB\R2023a</root>
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<toolboxes />
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</matlab>
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<platform>
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<unix>true</unix>
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<mac>true</mac>
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<windows>false</windows>
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<unix>false</unix>
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<mac>false</mac>
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<windows>true</windows>
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<win2k>false</win2k>
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<winxp>false</winxp>
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<vista>false</vista>
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<linux>false</linux>
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<solaris>false</solaris>
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<osver>12.6</osver>
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<osver>10.0</osver>
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<os32>false</os32>
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<os64>true</os64>
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<arch>maci64</arch>
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<arch>win64</arch>
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<matlab>true</matlab>
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</platform>
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</configuration>

‎POLCAM-SR/POLCAM_SR.mlapp‎

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‎POLCAM-SR/dialog apps/DialogAppImgDataDiffractionLimited.mlapp‎

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‎POLCAM-SR/docs/default settings/lastVisitedDirectories.json‎

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{
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"pathLastImg": "/Users/ezrabruggeman/Downloads/POLCAMdata/",
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"pathLastImg": "C:\\Users\\ezrab\\Desktop\\data steve\\",
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"pathLastLocs": "/Users/ezrabruggeman/Documents/GitHub/POLCAM-SR/POLCAM-SR/docs/samples/fibrils/"
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}

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