fix typos in readme, reknit

Author: fawda123

README.Rmd

@@ -126,7 +126,7 @@ The `objfun` function evaluates the detided metabolism estimates based on a sum
 Using the `winopt` function requires similar inputs as the `wtreg` function.
 
 ```{r, eval = F}
-# run optimiztaion in parallel
+# run optimization in parallel
 # requires parallel backend
 library(foreach)
 library(doParallel)
@@ -144,7 +144,7 @@ long <- -81.28
 # find optimal window widths for reducing anomalous metabolism estimates
 winopt(SAPDC, tz = tz, lat = lat, long = long, wins = list(6, 6, 0.5), parallel = T, vls = c('anomPg', 'anomRt'))
 
-stopCluser(cl)
+stopCluster(cl)
 ```
 
 The optimization function can take several hours to run and, if it works, should return three window widths for day, hour, and tide that achieve the rules of thumb.  The above example should return window widths that minimize only the anomalous metabolism estimates. It's worth noting that the "optimization surface" for the objective function is very irregular and the optimization function may not converge to a solution or may be trapped in a local minima.  For these reasons, it's often easier and less time consuming to create a regular grid of window widths to search and use the `objfun` function separately to manually identify an approximate solution.  An example for using a grid search can be found [here](https://github.com/fawda123/detide_eval/blob/9baf6dfbf7eec0b6b6b14ce340e5b387569ae05c/R/dat_proc.R#L67).

README.md

@@ -278,7 +278,7 @@ Using the `winopt` function requires similar inputs as the `wtreg`
 function.
 
 ``` r
-# run optimiztaion in parallel
+# run optimization in parallel
 # requires parallel backend
 library(foreach)
 library(doParallel)
@@ -296,7 +296,7 @@ long <- -81.28
 # find optimal window widths for reducing anomalous metabolism estimates
 winopt(SAPDC, tz = tz, lat = lat, long = long, wins = list(6, 6, 0.5), parallel = T, vls = c('anomPg', 'anomRt'))
 
-stopCluser(cl)
+stopCluster(cl)
 ```
 
 The optimization function can take several hours to run and, if it

log.txt

@@ -1,3 +1,3 @@
-Log entry time 2025-07-16 11:22:20.479203 
-1953  of  17568 
-Time difference of 10.80695 secs
+Log entry time 2025-07-16 20:43:40.558019 
+17568  of  17568 
+Time difference of 45.50015 secs