Merge branch 'topic/default/prepare-0.9.0' into 'branch/default'

Prepare 0.9.0

See merge request fluiddyn/fluidsim!446

Author: paugier

CHANGES.md

@@ -23,19 +23,48 @@ See also the [unreleased changes].
 
 % Security   Security in case of vulnerabilities.
 
+## [0.9.0] (2025-12-03)
+
+### Added/changed
+
+- [!440](https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/440) Better
+  mechanism to print information after simulation initiation
+
+- [!442](https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/442) Store "state
+  parameters" in restarting files
+
+- [!441](https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/441) and
+  [!443](https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/443) basic
+  utilities related to physical fields files {mod}`fluidsim.util.phys_fields`
+
+### Fixed
+
+- [!439](https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/439) Fix bug
+  restarting file names
+
+- [!445](https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/445) Update/fix
+  profile analysis
+
 ## [0.8.6] (2025-11-23)
 
 - Compatibility h5netcdf 1.7
 - Fix incorrect restart for forcing time correlated
 
 ## [0.8.5] (2025-10-23)
 
-- [!427](https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/427) Support for Python 3.14
-- [!421](https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/421) New time stepping method `RK2_phaseshift_random_split`
-- [!415](https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/415) `FLUIDSIM_TYPE_FFT2D` and `FLUIDSIM_TYPE_FFT3D` (see <https://fluidfft.readthedocs.io/en/latest/plugins.html>)
-- [!408](https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/408) `temporal_spectra.py`: improve plot_spectra
-- [!407](https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/407) Improve isotropic tcrandom forcing
-- [!400](https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/400) New script `scripts/install-fluidsim-stack-from-source.py`
+- [!427](https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/427) Support for
+  Python 3.14
+- [!421](https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/421) New time
+  stepping method `RK2_phaseshift_random_split`
+- [!415](https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/415)
+  `FLUIDSIM_TYPE_FFT2D` and `FLUIDSIM_TYPE_FFT3D` (see
+  <https://fluidfft.readthedocs.io/en/latest/plugins.html>)
+- [!408](https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/408)
+  `temporal_spectra.py`: improve plot_spectra
+- [!407](https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/407) Improve
+  isotropic tcrandom forcing
+- [!400](https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/400) New script
+  `scripts/install-fluidsim-stack-from-source.py`
 - and various fixes and small improvements...
 
 ## [0.8.4] (2024-11-08)
@@ -353,4 +382,5 @@ Merge with geofluidsim (Ashwin Vishnu Mohanan repository)
 [0.8.4]: https://foss.heptapod.net/fluiddyn/fluidsim/-/compare/0.8.3...0.8.4
 [0.8.5]: https://foss.heptapod.net/fluiddyn/fluidsim/-/compare/0.8.4...0.8.5
 [0.8.6]: https://foss.heptapod.net/fluiddyn/fluidsim/-/compare/0.8.5...0.8.6
-[unreleased changes]: https://foss.heptapod.net/fluiddyn/fluidsim/-/compare/0.8.6...branch%2Fdefault
+[0.9.0]: https://foss.heptapod.net/fluiddyn/fluidsim/-/compare/0.8.6...0.9.0
+[unreleased changes]: https://foss.heptapod.net/fluiddyn/fluidsim/-/compare/0.9.0...branch%2Fdefault

fluidsim/util/phys_fields.py

@@ -1,4 +1,14 @@
-"""Utilities for physical fields files"""
+"""Utilities for physical fields files
+
+.. autofunction:: save_file
+
+.. autofunction:: compute_file_name
+
+.. autofunction:: time_from_path
+
+.. autofunction:: name_file_from_time_approx
+
+"""
 
 import datetime
 import os
@@ -23,7 +33,7 @@
 
 
 @contextmanager
-def null_context(path, mode, **kwargs):
+def _null_context(path, mode, **kwargs):
     yield
 
 
@@ -66,13 +76,14 @@ def save_file(
     particular_attr=None,
     state_params=None,
 ):
+    """Save a state_phys file"""
     if mpi.nb_proc > 1 and cfg_h5py.mpi:
         h5py_kwargs = {"driver": "mpio", "comm": mpi.comm}
     else:
         h5py_kwargs = {}
 
     if mpi.nb_proc > 1 and not cfg_h5py.mpi and mpi.rank > 0:
-        File = null_context
+        File = _null_context
     else:
         File = h5pack.File
 

lib/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "flit_core.buildapi"
 
 [project]
 name = 'fluidsim-core'
-version = "0.8.6"
+version = "0.9.0"
 description = "Pure-Python core library for FluidSim framework"
 requires-python = ">=3.11"
 authors = [

pylock.toml

@@ -12,7 +12,7 @@ created-by = "pdm"
 
 [[packages]]
 name = "fluidsim-core"
-version = "0.8.6"
+version = "0.9.0"
 requires-python = ">=3.11"
 marker = "\"default\" in dependency_groups or \"dev\" in dependency_groups"
 
@@ -490,11 +490,11 @@ dependencies = [
 
 [[packages]]
 name = "ipython"
-version = "9.7.0"
+version = "9.8.0"
 requires-python = ">=3.11"
-sdist = {name = "ipython-9.7.0.tar.gz", url = "https://files.pythonhosted.org/packages/29/e6/48c74d54039241a456add616464ea28c6ebf782e4110d419411b83dae06f/ipython-9.7.0.tar.gz", hashes = {sha256 = "5f6de88c905a566c6a9d6c400a8fed54a638e1f7543d17aae2551133216b1e4e"}}
+sdist = {name = "ipython-9.8.0.tar.gz", url = "https://files.pythonhosted.org/packages/12/51/a703c030f4928646d390b4971af4938a1b10c9dfce694f0d99a0bb073cb2/ipython-9.8.0.tar.gz", hashes = {sha256 = "8e4ce129a627eb9dd221c41b1d2cdaed4ef7c9da8c17c63f6f578fe231141f83"}}
 wheels = [
-    {name = "ipython-9.7.0-py3-none-any.whl",url = "https://files.pythonhosted.org/packages/05/aa/62893d6a591d337aa59dcc4c6f6c842f1fe20cd72c8c5c1f980255243252/ipython-9.7.0-py3-none-any.whl",hashes = {sha256 = "bce8ac85eb9521adc94e1845b4c03d88365fd6ac2f4908ec4ed1eb1b0a065f9f"}},
+    {name = "ipython-9.8.0-py3-none-any.whl",url = "https://files.pythonhosted.org/packages/f1/df/8ee1c5dd1e3308b5d5b2f2dfea323bb2f3827da8d654abb6642051199049/ipython-9.8.0-py3-none-any.whl",hashes = {sha256 = "ebe6d1d58d7d988fbf23ff8ff6d8e1622cfdb194daf4b7b73b792c4ec3b85385"}},
 ]
 marker = "\"dev\" in dependency_groups or \"doc\" in dependency_groups or \"test\" in extras or \"test-mpi\" in extras"
 
@@ -724,11 +724,11 @@ dependencies = []
 
 [[packages]]
 name = "numpydoc"
-version = "1.9.0"
-requires-python = ">=3.9"
-sdist = {name = "numpydoc-1.9.0.tar.gz", url = "https://files.pythonhosted.org/packages/2f/19/7721093e25804cc82c7c1cdab0cce6b9343451828fc2ce249cee10646db5/numpydoc-1.9.0.tar.gz", hashes = {sha256 = "5fec64908fe041acc4b3afc2a32c49aab1540cf581876f5563d68bb129e27c5b"}}
+version = "1.10.0"
+requires-python = ">=3.10"
+sdist = {name = "numpydoc-1.10.0.tar.gz", url = "https://files.pythonhosted.org/packages/e9/3c/dfccc9e7dee357fb2aa13c3890d952a370dd0ed071e0f7ed62ed0df567c1/numpydoc-1.10.0.tar.gz", hashes = {sha256 = "3f7970f6eee30912260a6b31ac72bba2432830cd6722569ec17ee8d3ef5ffa01"}}
 wheels = [
-    {name = "numpydoc-1.9.0-py3-none-any.whl",url = "https://files.pythonhosted.org/packages/26/62/5783d8924fca72529defb2c7dbe2070d49224d2dba03a85b20b37adb24d8/numpydoc-1.9.0-py3-none-any.whl",hashes = {sha256 = "8a2983b2d62bfd0a8c470c7caa25e7e0c3d163875cdec12a8a1034020a9d1135"}},
+    {name = "numpydoc-1.10.0-py3-none-any.whl",url = "https://files.pythonhosted.org/packages/62/5e/3a6a3e90f35cea3853c45e5d5fb9b7192ce4384616f932cf7591298ab6e1/numpydoc-1.10.0-py3-none-any.whl",hashes = {sha256 = "3149da9874af890bcc2a82ef7aae5484e5aa81cb2778f08e3c307ba6d963721b"}},
 ]
 marker = "\"doc\" in dependency_groups"
 
@@ -4167,7 +4167,7 @@ marker = "\"doc\" in dependency_groups"
 dependencies = []
 
 [tool.pdm]
-hashes = {sha256 = "5cea7ed2c5ac5f917b4858308e2bef45bb3ba26f0d1c15fa57a7badaafc75bbb"}
+hashes = {sha256 = "3a7a7cf5a90f1019dffb0e2252f3a2c241722adf8b67c73867a193e330287d58"}
 strategy = ["inherit_metadata", "static_urls"]
 
 [[tool.pdm.targets]]

pyproject.toml

@@ -19,10 +19,12 @@ keywords = [
 authors = [
     {name = "pierre.augier", email = "[email protected]"},
 ]
-version = '0.8.6'
+version = '0.9.0'
 requires-python = ">=3.11"
 dependencies = [
-    "fluidsim-core>=0.8.1",
+    # should be (but issue PDM)
+    # "fluidsim-core==0.9.0",
+    "fluidsim-core>=0.8.6,<0.9.1",
     "h5py",
     "h5netcdf",
     "transonic>=0.6.2",