Warning

This repo has moved to https://gitlab.com/flywheel-io/scientific-solutions/gears/pydeface

pydeface-gear

A flywheel gear to remove facial structure from MRI images.

Leverages FSL, Python 3, NumPy, NiBabel, and Nipype to coregister a provided image to a template and removes facial features by removing the facial structure in accordance with the registration template and face mask. User may provide a template and face mask.

Website

The source code of pydeface can be found at github

Usage Notes

inputs

• infile (required): The NIfTI file to remove facial structure from
• template (optional): The optional template image that will be used as the registration target instead of the default.
• facemask (optional): The optional face mask image that will be used instead of the default.

parameters

• cost: FSL-FLIRT cost function. "mutualinfo" default.
• nocleanup: Do not cleanup temporary files. On by default.
• verbose: Show additional status prints. On by default.