Fractal-task-tools provides some basic tools for building tasks for the Fractal framework.
Fractal is a framework developed at the BioVisionCenter to process bioimaging data at scale in the OME-Zarr format and prepare the images for interactive visualization.
$ python -m venv venv
$ source venv/bin/activate
$ python -m pip install -e .
[...]
Successfully installed annotated-types-0.7.0 docstring-parser-0.15 fractal-task-tools-0.0.1 pydantic-2.8.2 pydantic-core-2.20.1 typing-extensions-4.12.2
$ fractal-manifest create --help
usage: fractal-manifest create [-h] --package PACKAGE [--task-list-path TASK_LIST_PATH]
Create new manifest file
options:
-h, --help show this help message and exit
--package PACKAGE Example: 'fractal_tasks_core'
--task-list-path TASK_LIST_PATH
Dot-separated path to the `task_list.py` module, relative to the package root (default value:
'dev.task_list').
$ python -m venv venv
$ source venv/bin/activate
$ python -m pip install -e .[dev]
[...]
Successfully installed asttokens-2.4.1 bumpver-2024.1130 click-8.1.8 colorama-0.4.6 coverage-7.6.12 devtools-0.12.2 exceptiongroup-1.2.2 executing-2.2.0 fractal-task-tools-0.0.1 iniconfig-2.0.0 lexid-2021.1006 packaging-24.2 pluggy-1.5.0 pygments-2.19.1 pytest-8.3.5 six-1.17.0 toml-0.10.2 tomli-2.2.1
$ pre-commit install
pre-commit installed at .git/hooks/pre-commitFrom the development environment:
bumpver update --patch --dry
Fractal was conceived in the Liberali Lab at the Friedrich Miescher Institute for Biomedical Research and in the Pelkmans Lab at the University of Zurich by @jluethi and @gusqgm. The Fractal project is now developed at the BioVisionCenter at the University of Zurich and the project lead is with @jluethi. The core development is done under contract by eXact lab S.r.l..
Unless otherwise specified, Fractal components are released under the BSD 3-Clause License, and copyright is with the BioVisionCenter at the University of Zurich.