What data to use for skills course?

[k8hertweck]

• mouse and/or human (one for in-class, another for challenge exercises)
• subset by extracting only one chromosome, or a set of genes
• where to obtain reference data? Whole genome or custom set? Shared location or each person download on their own?

[k8hertweck]

Ideally a two way comparison, 3x3 treatments, 2 pass.

[k8hertweck]

Reanalysis of mouse ENCODE data, which explores batch effects, species comparisons, and tissue comparisons