rumyantsev-recreation/.gitignore at dev · furmanlukasz/rumyantsev-recreation · GitHub

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# Scientific Data Files
*.parquet
*.npz
*.npy
*.mat
*.h5
*.hdf5

documents/
docs/

# Large output files (keep structure, but allow key example figures)
outputs/*.npz

# Python
__pycache__/
*.py[cod]
*$py.class
*.so
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
pip-wheel-metadata/
share/python-wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST

# Virtual environments
.env
.venv
env/
venv/
ENV/
env.bak/
venv.bak/
*.venv/
.python-version

# Jupyter Notebook
.ipynb_checkpoints
# Allow the reproduction notebook
!notebooks/reproduce_figure_2.ipynb

# IPython
profile_default/
ipython_config.py

# Testing
.pytest_cache/
.coverage
.coverage.*
htmlcov/
.tox/
.nox/
coverage.xml
*.cover
*.log

# IDEs
.vscode/
.idea/
*.swp
*.swo
*~
.DS_Store

# mypy
.mypy_cache/
.dmypy.json
dmypy.json

# Pyre type checker
.pyre/

# macOS
.DS_Store
.AppleDouble
.LSOverride

# Thumbnails
._*

# Files that might appear in the root of a volume
.DocumentRevisions-V100
.fseventsd
.Spotlight-V100
.TemporaryItems
.Trashes
.VolumeIcon.icns
.com.apple.timemachine.donotpresent

# Directories potentially created on remote AFP share
.AppleDB
.AppleDesktop
Network Trash Folder
Temporary Items
.adb

# Temporary analysis scripts
verify_cell_idx.py
save_intermediate.py