rumyantsev-recreation/pyproject.toml at dev · furmanlukasz/rumyantsev-recreation · GitHub

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[project]
name = "rumyantsev-recreation"
version = "0.1.0"
description = "Recreation of Figure 2d/2e from Rumyantsev et al. 2020"
authors = [
    {name = "Stanford Collaboration", email = "contact@example.com"}
]
readme = "README.md"
requires-python = ">=3.10"

dependencies = [
    "polars>=0.19.0",
    "pyarrow>=14.0.0",
    "numpy>=1.24.0",
    "scipy>=1.11.0",
    "matplotlib>=3.7.0",
    "seaborn>=0.12.0",
    "pyyaml>=6.0",
    "tqdm>=4.65.0",
]

[project.optional-dependencies]
# For interactive Jupyter notebook usage
notebook = [
    "jupyter>=1.0.0",
    "ipykernel>=6.25.0",
    "notebook>=7.0.0",
]

# For development and testing
dev = [
    "pytest>=7.4.0",
    "pytest-cov>=4.1.0",
    "ruff>=0.1.0",
    "mypy>=1.5.0",
    "black>=23.0.0",
    "jupyter>=1.0.0",
    "ipykernel>=6.25.0",
    "notebook>=7.0.0",
]

[build-system]
requires = ["setuptools>=68.0.0", "wheel"]
build-backend = "setuptools.build_meta"

[tool.pytest.ini_options]
testpaths = ["tests"]
python_files = ["test_*.py"]
python_classes = ["Test*"]
python_functions = ["test_*"]
addopts = [
    "-v",
    "--tb=short",
    "--strict-markers",
]

[tool.coverage.run]
source = ["src"]
omit = ["tests/*", "*/conftest.py"]

[tool.coverage.report]
exclude_lines = [
    "pragma: no cover",
    "def __repr__",
    "raise AssertionError",
    "raise NotImplementedError",
    "if __name__ == .__main__.:",
]

[tool.ruff]
line-length = 100
target-version = "py310"

[tool.mypy]
python_version = "3.10"
warn_return_any = true
warn_unused_configs = true
disallow_untyped_defs = false
ignore_missing_imports = true