Open
Description
So, although this is unlikely to happen, here it goes:
This works:
library(future)
plan(future.batchtools::batchtools_local)
options(future.debug = TRUE)
f <- future(42)But not this:
library(future)
loadNamespace("BatchJobs")
plan(future.batchtools::batchtools_local)
options(future.debug = TRUE)
f <- future(42)which gives:
[12:10:52.163] getGlobalsAndPackages() ...
[12:10:52.164] Searching for globals...
[12:10:52.165]
[12:10:52.166] Searching for globals ... DONE
[12:10:52.166] - globals: [0] <none>
[12:10:52.166] getGlobalsAndPackages() ... DONE
No readable configuration file found
Created registry in '/home/hb/repositories/future.batchtools/.future/20190622_121007-qn0hej/batchtools_978006181' using cluster functions 'Interactive'
Error in dbDoQuery(reg, query) :
Error while etablishing the connection: Error in do.call(reg$db.driver, list()) :
'what' must be a function or character string
[12:10:52.431] batchtools::waitForJobs() ...
[12:10:52.447] - batchtools::waitForJobs(): TRUE
[12:10:52.461] - status(): 'defined', 'finished', 'started', 'submitted'
[12:10:52.462] batchtools::waitForJobs() ... done
[12:10:52.462] Results:
[12:10:52.484] List of 7
[12:10:52.484] $ value : num 42
[12:10:52.484] $ stdout : chr ""
[12:10:52.484] $ conditions : list()
[12:10:52.484] $ started : POSIXct[1:1], format: "2019-06-22 12:10:09"
[12:10:52.484] $ finished : POSIXct[1:1], format: "2019-06-22 12:10:09"
[12:10:52.484] $ version : chr "1.8"
[12:10:52.484] $ batchtools_log: chr [1:9] "### [bt]: This is batchtools v0.9.11" "### [bt]: Starting calculation of 1 jobs" "### [bt]: Setting working directory to '/home/hb/repositories/future.batchtools'" "### [bt]: Memory measurement disabled" ...
[12:10:52.484] - attr(*, "class")= chr "FutureResult"
[12:10:52.497] delete(): Option 'future.delete = '<NULL>'
Removing 1 jobs ...
Removing user function ...
Removing 1 obsolete result files ...
Removing 1 obsolete log files ...
Recursively removing files in '/home/hb/repositories/future.batchtools/.future/20190622_121007-qn0hej/batchtools_607848383' ...
[12:10:52.543] delete(): batchtools registry deleted: '/home/hb/repositories/future.batchtools/.future/20190622_121007-qn0hej/batchtools_607848383'
Enter a frame number, or 0 to exit
1: future(42)
2: .makeFuture(expr, substitute = FALSE, envir = envir, globals = globals, pac
3: makeFuture(...)
4: BatchtoolsFuture(expr = expr, envir = envir, substitute = FALSE, globals =
5: mprint(reg)
6: message(paste(now(), capture.output(print(...)), sep = "", collapse = "\n")
7: paste(now(), capture.output(print(...)), sep = "", collapse = "\n")
8: capture.output(print(...))
9: evalVis(expr)
10: withVisible(eval(expr, pf))
11: eval(expr, pf)
12: eval(expr, pf)
13: print(...)
14: print.Registry(...)
15: cat(" Number of jobs: ", dbGetJobCount(x), "\n")
16: dbGetJobCount(x)
17: dbDoQuery(reg, query)
18: stopf("Error while etablishing the connection: %s", as.character(con))
19: stop(obj)
20: (function ()
{
replicate(sink.number(), sink(NULL))
if (interactiv