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Description
Describe the bug
I wasn't sure whether to post this here or in the 'tidymodels' repo, but using future.callr does not seem to work in conjunction with tune::tune_grid(). I've been using future.callr to stop grid searches and model building from consuming all GPU RAM, and it's been working great thus far. However, combining this approach with the tidymodels framework leads to issues.
Reproduce example
library(tidymodels)
library(future)
library(doFuture)
library(future.callr)
library(xgboost)
xgb_build <- boost_tree(
trees = 30L,
stop_iter = 3L,
tree_depth = 2L,
min_n = 3L,
loss_reduction = tune(),
sample_size = tune(),
mtry = tune(),
learn_rate = tune(),
) %>%
set_engine("xgboost", booster = "gbtree", objective = "reg:squarederror") %>%
set_mode("regression")
#~ Generate recipe
xgb_recipe <- recipe(
Sepal.Length ~ .,
data = iris
) %>%
step_dummy(all_nominal_predictors())
#~ Generate hypergrid
set.seed(123)
xgb_hypergrid <- grid_latin_hypercube(
loss_reduction(),
sample_size = sample_prop(c(0.7, 1)),
finalize(mtry(), iris),
learn_rate(),
size = 20
)
xgb_wf <- workflow() %>%
add_recipe(xgb_recipe) %>%
add_model(xgb_build)
xgb_folds <- vfold_cv(
iris,
v = 5,
repeats = 3
)
registerDoFuture()
# 'multisession' works
plan(multisession, workers = 4)
xgb_tune_multisession <- tune_grid(
xgb_wf,
resamples = xgb_folds,
grid = xgb_hypergrid,
metrics = metric_set(rmse),
control = control_grid(extract = extract_fit_engine, allow_par = TRUE)
)
# 'cluster' works
cl <- parallel::makeCluster(4)
plan(cluster, workers = cl)
xgb_tune_multisession <- tune_grid(
xgb_wf,
resamples = xgb_folds,
grid = xgb_hypergrid,
metrics = metric_set(rmse),
control = control_grid(extract = extract_fit_engine, allow_par = TRUE)
)
parallel::stopCluster(cl)
# 'callr' fails
plan(callr, workers = 4)
xgb_tune <- tune_grid(
xgb_wf,
resamples = xgb_folds,
grid = xgb_hypergrid,
metrics = metric_set(rmse),
control = control_grid(extract = extract_fit_engine, allow_par = TRUE)
)
Using tune_grid()
with plan(callr)
leads to an error that seems to be due to a namespacing issue:
Error in UseMethod("load_pkgs"): no applicable method for 'load_pkgs' applied to an object of class "function"`
Expected behavior
The function tune::tune_grid() has support for multithreading via futures (using 'doFuture'), so I expected plan(callr) to work without issue (as the other plan() calls do).
Session information
R version 4.3.1 (2023-06-16)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.04.6 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
time zone: Europe/Brussels
tzcode source: system (glibc)
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] yardstick_1.2.0 workflowsets_1.0.1 workflows_1.1.3 tune_1.1.2 tidyr_1.3.0 tibble_3.2.1 rsample_1.2.0 recipes_1.0.9 purrr_1.0.2
[10] parsnip_1.1.1 modeldata_1.2.0 infer_1.0.5 ggplot2_3.4.4 dplyr_1.1.4 dials_1.2.0 scales_1.2.1 broom_1.0.5 tidymodels_1.1.1
[19] future.callr_0.8.2 doFuture_1.0.1 foreach_1.5.2 future_1.33.1
loaded via a namespace (and not attached):
[1] gtable_0.3.4 processx_3.8.3 lattice_0.22-5 callr_3.7.3 vctrs_0.6.4 tools_4.3.1 ps_1.7.5 generics_0.1.3
[9] parallel_4.3.1 fansi_1.0.5 pkgconfig_2.0.3 Matrix_1.6-1.1 data.table_1.14.10 lhs_1.1.6 GPfit_1.0-8 lifecycle_1.0.3
[17] compiler_4.3.1 munsell_0.5.0 codetools_0.2-19 DiceDesign_1.10 class_7.3-22 prodlim_2023.08.28 pillar_1.9.0 furrr_0.3.1
[25] MASS_7.3-60 gower_1.0.1 iterators_1.0.14 rpart_4.1.21 parallelly_1.36.0 lava_1.7.3 tidyselect_1.2.0 digest_0.6.34
[33] listenv_0.9.0 splines_4.3.1 grid_4.3.1 colorspace_2.1-0 cli_3.6.1 magrittr_2.0.3 survival_3.5-7 utf8_1.2.3
[41] future.apply_1.11.1 withr_2.5.1 backports_1.4.1 lubridate_1.9.3 timechange_0.2.0 globals_0.16.2 nnet_7.3-19 timeDate_4032.109
[49] hardhat_1.3.0 rlang_1.1.3 Rcpp_1.0.11 glue_1.6.2 ipred_0.9-14 rstudioapi_0.15.0 R6_2.5.1
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