Skip to content

Some fields should suggest a subset of a given ontology #21

@dbujold

Description

@dbujold

From @sveinugu:

Since e.g. not all terms in the OBI ontology describe experiment assays, it might be an idea to specify that for the “assay_type” field, all terms should have the “assay” concept as an ancestor: (https://bioportal.bioontology.org/ontologies/OBI?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FOBI_0000070)

And similarly for other fields specifying terms. We did this in the FAIRtracks model, e.g. https://github.com/fairtracks/fairtracks_standard/blob/master/docs/fairtracks_experiment-properties-experimental-technique.md#term_id (Here we used the more generic concept “planned process” as the ancestor for a more generic field “experimental technique”: https://bioportal.bioontology.org/ontologies/OBI?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FOBI_0000011)

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions