diff --git a/.circleci/config.yml b/.circleci/config.yml index 4f64e39..ec002d0 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -55,7 +55,7 @@ variables: command: | gzip -dk tests/data/test.vcf.gz cat tests/data/test.vcf | docker run -i mmsplice vep --plugin MMSplice --format vcf --assembly GRCh37 --database --port 3337 --vcf -o STDOUT | tee log_variant_effect_output.txt - sed -n '/##fileformat=VCFv4.0/,$p' log_variant_effect_output.txt > variant_effect_output.txt + sed -n '/##fileformat=VCFv4.*/,$p' log_variant_effect_output.txt > variant_effect_output.txt test_docker: &test_docker run: name: Test vep plugin in docker diff --git a/tests/data/test.vcf.gz b/tests/data/test.vcf.gz index 9d14bb4..945d463 100644 Binary files a/tests/data/test.vcf.gz and b/tests/data/test.vcf.gz differ diff --git a/tests/data/test.vcf.gz.tbi b/tests/data/test.vcf.gz.tbi index 37e67af..ac8fcde 100644 Binary files a/tests/data/test.vcf.gz.tbi and b/tests/data/test.vcf.gz.tbi differ