Address review comments

Author: nuwang

bioblend/galaxy/__init__.py

@@ -39,6 +39,7 @@ def __init__(
         email: Optional[str] = None,
         password: Optional[str] = None,
         *,
+        token: Optional[str] = None,
         verify: bool = True,
     ) -> None:
         """
@@ -79,10 +80,16 @@ def __init__(
         :param password: Password of Galaxy account corresponding to the above
                          e-mail address. Ignored if key is supplied directly.
 
+        :type token: str
+        :param token: An OIDC access token obtained from an OIDC provider
+                      configured in `oidc_backends_config.xml`. Can be used
+                      as a substitue for an API key. You must make sure the access
+                      token has not expired when making an API call.
+
         :param verify: Whether to verify the server's TLS certificate
         :type verify: bool
         """
-        super().__init__(url, key=key, email=email, password=password, verify=verify)
+        super().__init__(url, key=key, email=email, password=password, token=token, verify=verify)
         self.libraries = libraries.LibraryClient(self)
         self.histories = histories.HistoryClient(self)
         self.workflows = workflows.WorkflowClient(self)

bioblend/galaxy/objects/galaxy_instance.py

@@ -57,9 +57,10 @@ def __init__(
         email: Optional[str] = None,
         password: Optional[str] = None,
         *,
+        token: Optional[str] = None,
         verify: bool = True,
     ) -> None:
-        self.gi = bioblend.galaxy.GalaxyInstance(url, key=api_key, email=email, password=password, verify=verify)
+        self.gi = bioblend.galaxy.GalaxyInstance(url, key=api_key, email=email, password=password, token=token, verify=verify)
         self.log = bioblend.log
         self.datasets = client.ObjDatasetClient(self)
         self.dataset_collections = client.ObjDatasetCollectionClient(self)

bioblend/galaxyclient.py

@@ -34,10 +34,10 @@ def __init__(
         self,
         url: str,
         key: Optional[str] = None,
-        token: Optional[str] = None,
         email: Optional[str] = None,
         password: Optional[str] = None,
         *,
+        token: Optional[str] = None,
         verify: bool = True,
         timeout: Optional[float] = None,
     ) -> None:

bioblend/toolshed/__init__.py

@@ -19,6 +19,7 @@ def __init__(
         email: Optional[str] = None,
         password: Optional[str] = None,
         *,
+        token: Optional[str] = None,
         verify: bool = True,
     ) -> None:
         """
@@ -57,10 +58,15 @@ def __init__(
         :param password: Password of ToolShed account corresponding to the above
                          e-mail address. Ignored if key is supplied directly.
 
+        :param token: An OIDC access token obtained from an OIDC provider
+                      configured in `oidc_backends_config.xml`. Can be used
+                      as a substitue for an API key. You must make sure the access
+                      token has not expired when making an API call.
+
         :param verify: Whether to verify the server's TLS certificate
         :type verify: bool
         """
-        super().__init__(url, key=key, email=email, password=password, verify=verify)
+        super().__init__(url, key=key, email=email, password=password, token=token, verify=verify)
         self.categories = categories.ToolShedCategoryClient(self)
         self.repositories = repositories.ToolShedRepositoryClient(self)
         self.tools = tools.ToolShedToolClient(self)