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feat: send origin in landing requests to galaxy #963

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feat: send origin in landing requests to galaxy

feat: send origin in landing requests to galaxy #963

Workflow file for this run

.github/workflows/run-checks.yml at 8bb5167
name: Run checks
on: [pull_request]
jobs:
e2e-tests:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: actions/setup-node@v4
with:
node-version: "20.10.0"
- name: Cache npm cache
uses: actions/cache@v4
with:
path: ~/.npm
key: ${{ runner.os }}-node-${{ hashFiles('package-lock.json') }}
- name: Install dependencies
run: npm ci
- name: Install Playwright browsers
run: npx playwright install --with-deps
- name: Run e2e tests
run: npm run test:e2e
- name: Upload test results
uses: actions/upload-artifact@v4
if: failure()
with:
name: playwright-report
path: playwright-report/
retention-days: 7
run-checks:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: actions/setup-node@v4
with:
node-version: "20.10.0"
- name: Cache npm cache
uses: actions/cache@v4
with:
path: ~/.npm
key: ${{ runner.os }}-node-${{ hashFiles('package-lock.json') }}
- name: Install dependencies
run: npm ci
- name: Run Prettier
run: npm run check-format
- name: Run Linter (ESLint)
run: npm run lint
- name: Type Check
run: npx tsc --noEmit
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: "3.12.4"
cache: "pip"
cache-dependency-path: "./catalog/build/py/requirements.txt"
- name: Install Python dependencies
run: pip install -r ./catalog/build/py/requirements.txt
- name: Run linkml-lint
# Run linting on the LinkML schemas, to enforce conventions such as in naming, and to catch simple errors.
run: npm run lint-schema
- name: Test LinkML Python generation
# Generate Python code from the main LinkML schemas, discarding the output; this will catch more subtle errors such as references to nonexistent elements.
run: npm run test-gen-python
- name: Validate BRC catalog files
# Validate the catalog source files against their corresponding LinkML schemas.
run: npm run validate-brc-catalog
- name: Validate GA2 catalog files
# Validate the GA2 catalog source files.
run: npm run validate-ga2-catalog
- name: poetry lint
# Validate the GA2 catalog source files.
run: poetry check -P catalog/py_package/
api-tests:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v6
- name: Set up Python
uses: actions/setup-python@v6
with:
python-version: "3.12"
- name: Install uv
uses: astral-sh/setup-uv@v7
- name: Create backend .env file
run: cp backend/api/.env.example backend/api/.env
- name: Build catalog data
run: |
npm ci
npm run build-brc-db
- name: Start backend services
run: |
cd backend
docker compose up -d --build
docker compose logs
- name: Wait for services to be healthy
run: |
timeout 60 bash -c 'until curl -s http://localhost:8080/api/v1/health | grep -q healthy; do sleep 2; done'
- name: Run API smoke tests
run: |
cd backend/api
uv run --extra dev pytest tests/ -v
- name: Show logs on failure
if: failure()
run: |
cd backend
docker compose logs
- name: Stop backend services
if: always()
run: |
cd backend
docker compose down -v