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Update brc data catalog #36

Update brc data catalog

Update brc data catalog #36

name: Update brc data catalog
on:
schedule:
# At 10:00 on Sunday
- cron: "0 10 * * 0"
# Allows you to run this workflow manually from the Actions tab
workflow_dispatch:
jobs:
update-catalog:
if: github.repository == 'galaxyproject/brc-analytics'
permissions:
contents: write
pull-requests: write
runs-on: ubuntu-latest
steps:
- uses: actions/setup-python@v5
with:
python-version: "3.12"
architecture: "x64"
- name: Checkout
uses: actions/checkout@v4
- name: Install python dependencies
run: pip install -r ./catalog/build/py/requirements.txt
- name: Install npm dependencies
run: npm ci
- name: Run catalog script
run: npm run build-brc-from-ncbi
- name: Get current date
id: date
run: echo "date=$(date +'%Y-%m-%d')" >> $GITHUB_OUTPUT
- name: Create Pull Request
uses: peter-evans/create-pull-request@v7
with:
token: ${{ secrets.GITHUB_TOKEN }}
title: "chore: update data catalog ${{ steps.date.outputs.date }}"
commit-message: "chore: update data catalog ${{ steps.date.outputs.date }}"