galaxyproject
diff --git a/‎.github/workflows/update-eu-genome-count.yml‎
Lines changed: 49 additions & 0 deletions b/‎.github/workflows/update-eu-genome-count.yml‎
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diff --git a/‎astro/src/build/generate-redirects.mjs‎
Lines changed: 13 additions & 5 deletions b/‎astro/src/build/generate-redirects.mjs‎
Lines changed: 13 additions & 5 deletions
diff --git a/‎astro/src/build/generate-redirects.test.mjs‎
Lines changed: 39 additions & 0 deletions b/‎astro/src/build/generate-redirects.test.mjs‎
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diff --git a/‎astro/src/components/embed/Flickr.vue‎
Lines changed: 18 additions & 0 deletions b/‎astro/src/components/embed/Flickr.vue‎
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diff --git a/‎astro/src/components/mdx/EuSiteFooter.astro‎
Lines changed: 2 additions & 2 deletions b/‎astro/src/components/mdx/EuSiteFooter.astro‎
Lines changed: 2 additions & 2 deletions
diff --git a/‎astro/src/layouts/BareArticleLayout.astro‎
Lines changed: 10 additions & 0 deletions b/‎astro/src/layouts/BareArticleLayout.astro‎
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diff --git a/‎astro/src/pages/eu/events/calendar.ics.ts‎
Lines changed: 115 additions & 0 deletions b/‎astro/src/pages/eu/events/calendar.ics.ts‎
Lines changed: 115 additions & 0 deletions
diff --git a/‎astro/src/stores/subsiteStore.test.ts‎
Lines changed: 13 additions & 0 deletions b/‎astro/src/stores/subsiteStore.test.ts‎
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diff --git a/‎astro/src/stores/subsiteStore.ts‎
Lines changed: 5 additions & 0 deletions b/‎astro/src/stores/subsiteStore.ts‎
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diff --git a/‎astro/src/utils/contributors.ts‎
Lines changed: 1 addition & 0 deletions b/‎astro/src/utils/contributors.ts‎
Lines changed: 1 addition & 0 deletions
@@ -0,0 +1,49 @@
+name: Update EU Genome Count
+on:
+  workflow_dispatch:
+  schedule:
+    # Every Sunday at 23:00 UTC (same cadence as update-eu-tools)
+    - cron: "00 23 * * 0"
+
+permissions:
+  contents: write
+  pull-requests: write
+
+jobs:
+  update-genome-count:
+    runs-on: ubuntu-latest
+    if: github.repository_owner == 'galaxyproject'
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v6
+
+      - name: Generate GitHub App token
+        id: app-token
+        uses: actions/create-github-app-token@v3
+        with:
+          client-id: ${{ secrets.HUB_BOT_APP_CLIENT_ID }}
+          private-key: ${{ secrets.HUB_BOT_APP_PRIVATE_KEY }}
+
+      - name: Setup Python
+        uses: actions/setup-python@v6
+        with:
+          python-version: "3.12"
+
+      - name: Install dependencies
+        run: pip install pandas
+
+      - name: Run update script
+        run: python scripts/update-eu-genome-count.py
+
+      - name: Create Pull Request
+        uses: peter-evans/create-pull-request@v8
+        with:
+          token: ${{ steps.app-token.outputs.token }}
+          commit-message: "chore(eu/assembly): update VGP/ERGA genome count"
+          title: "Update VGP/ERGA Genome Count"
+          body: |
+            Auto-generated PR with the updated genome count from the
+            [VGP/ERGA Google Sheet](https://docs.google.com/spreadsheets/d/1Kya38LUDom4u7osTTY3uYyNor7AMpyLYxz5MaulciZc/)
+            for the [Galaxy Assembly](https://assembly.usegalaxy.eu) bare page.
+          branch: update-eu-genome-count
+          delete-branch: true
@@ -54,6 +54,16 @@ function legacyNormalize(slug) {
     .join('/');
 }
 
+function hasFileExtension(urlPath) {
+  const pathname = urlPath.split(/[?#]/, 1)[0];
+  return /\.[^/.]+$/.test(pathname);
+}
+
+function normalizeRedirectTarget(toPath) {
+  if (toPath.includes('://') || toPath.endsWith('/') || hasFileExtension(toPath)) return toPath;
+  return `${toPath}/`;
+}
+
 /**
  * Extract a frontmatter field value, handling single-line and multi-line YAML
  */
@@ -110,8 +120,7 @@ async function getContentData() {
           if (redirect && !redirect.includes('://')) {
             const fromPath = `/${slug}/`.replace(/\/+/g, '/');
             const toPath = redirect.startsWith('/') ? redirect : `/${redirect}`;
-            const normalizedTo = toPath.endsWith('/') ? toPath : `${toPath}/`;
-            contentRedirects[fromPath] = normalizedTo;
+            contentRedirects[fromPath] = normalizeRedirectTarget(toPath);
           }
         }
       }
@@ -225,8 +234,7 @@ async function generateRedirects() {
 
   for (const [from, to] of Object.entries(yamlData.redirects)) {
     const fromPath = from.endsWith('/') ? from : `${from}/`;
-    const isExternal = to.includes('://');
-    const toPath = isExternal || to.endsWith('/') ? to : `${to}/`;
+    const toPath = normalizeRedirectTarget(to);
     redirects[fromPath] = toPath;
   }
 
@@ -275,4 +283,4 @@ if (import.meta.url === `file://${process.argv[1]}`) {
     });
 }
 
-export { generateRedirects, legacyNormalize, legacyNormalizeSegment };
+export { generateRedirects, legacyNormalize, legacyNormalizeSegment, normalizeRedirectTarget, hasFileExtension };
@@ -0,0 +1,39 @@
+import { describe, it, expect } from 'vitest';
+import { normalizeRedirectTarget, hasFileExtension } from './generate-redirects.mjs';
+
+describe('redirect normalization helpers', () => {
+  describe('hasFileExtension', () => {
+    it('returns true for paths with file extensions', () => {
+      expect(hasFileExtension('/eu/events/calendar.ics')).toBe(true);
+      expect(hasFileExtension('/events-ical.html')).toBe(true);
+      expect(hasFileExtension('/some/path/file.txt')).toBe(true);
+    });
+
+    it('returns false for paths without file extensions', () => {
+      expect(hasFileExtension('/eu/events/')).toBe(false);
+      expect(hasFileExtension('/eu/events')).toBe(false);
+    });
+  });
+
+  describe('normalizeRedirectTarget', () => {
+    it('appends a trailing slash to ordinary internal page targets', () => {
+      expect(normalizeRedirectTarget('/eu/events')).toBe('/eu/events/');
+      expect(normalizeRedirectTarget('/news')).toBe('/news/');
+    });
+
+    it('preserves external URLs', () => {
+      expect(normalizeRedirectTarget('https://usegalaxy.org/bushman')).toBe('https://usegalaxy.org/bushman');
+      expect(normalizeRedirectTarget('http://gcc2015.tsl.ac.uk/')).toBe('http://gcc2015.tsl.ac.uk/');
+    });
+
+    it('preserves trailing-slash targets', () => {
+      expect(normalizeRedirectTarget('/eu/events/')).toBe('/eu/events/');
+      expect(normalizeRedirectTarget('/')).toBe('/');
+    });
+
+    it('preserves file-extension targets', () => {
+      expect(normalizeRedirectTarget('/eu/events/calendar.ics')).toBe('/eu/events/calendar.ics');
+      expect(normalizeRedirectTarget('/events-ical.html')).toBe('/events-ical.html');
+    });
+  });
+});
@@ -6,10 +6,16 @@ const props = defineProps<{
   albumId?: string;
   userId?: string;
   url?: string;
+  link?: string;
+  title?: string;
+  cover?: string;
+  coverWidth?: string | number;
+  coverHeight?: string | number;
 }>();
 
 const embedUrl = computed(() => {
   if (props.url) return props.url;
+  if (props.link) return props.link;
 
   if (props.photoId) {
     return `https://www.flickr.com/photos/${props.userId || 'galaxyproject'}/${props.photoId}/`;
@@ -21,6 +27,9 @@ const embedUrl = computed(() => {
 
   return '';
 });
+
+const imageWidth = computed(() => (props.coverWidth ? String(props.coverWidth) : undefined));
+const imageHeight = computed(() => (props.coverHeight ? String(props.coverHeight) : undefined));
 </script>
 
 <template>
@@ -32,6 +41,15 @@ const embedUrl = computed(() => {
         rel="noopener noreferrer"
         class="inline-block p-4 bg-ebony-clay-50 rounded-lg hover:bg-ebony-clay-100 transition-colors"
       >
+        <img
+          v-if="cover"
+          :src="cover"
+          :alt="title || 'Flickr photo'"
+          :width="imageWidth"
+          :height="imageHeight"
+          class="mx-auto mb-3 rounded-lg"
+          loading="lazy"
+        />
         <div class="flex items-center gap-2 text-chicago-700">
           <svg class="w-6 h-6" viewBox="0 0 24 24" fill="currentColor">
             <circle cx="7" cy="12" r="5" fill="#0063DC" />
 
@@ -20,11 +20,11 @@ const links = [
   <p class="mx-auto text-chicago-700">
     UseGalaxy.eu is maintained largely by the <a
       class="text-galaxy-primary underline underline-offset-2 hover:text-galaxy-gold"
-      href="https://usegalaxy-eu.github.io/freiburg/">Freiburg Galaxy Team</a
+      href="/freiburg/">Freiburg Galaxy Team</a
     > and collectively by groups and individuals from across Europe. All member sites in this repository contribute to the
     European Galaxy Project. For acknowledgement, please refer to the <a
       class="text-galaxy-primary underline underline-offset-2 hover:text-galaxy-gold"
-      href="https://usegalaxy-eu.github.io/about">About section</a
+      href="/eu/about/">About section</a
     >. All content on this site is available under <a
       class="text-galaxy-primary underline underline-offset-2 hover:text-galaxy-gold"
       href="https://creativecommons.org/share-your-work/public-domain/cc0/">CC0-1.0</a
 
@@ -47,11 +47,21 @@ const { title, description } = Astro.props;
     --tw-prose-headings: #2c3143;
   }
 
+  .prose-galaxy table {
+    width: 100%;
+    max-width: 100%;
+    border-collapse: collapse;
+    display: block;
+    overflow-x: auto;
+    -webkit-overflow-scrolling: touch;
+  }
+
   .prose-galaxy a {
     color: var(--tw-prose-links);
     text-decoration: underline;
     text-decoration-color: color-mix(in srgb, var(--tw-prose-links) 40%, transparent);
     text-underline-offset: 2px;
+    overflow-wrap: anywhere;
   }
 
   .prose-galaxy a:hover {
 
@@ -0,0 +1,115 @@
+import { getCollection } from 'astro:content';
+import type { APIContext } from 'astro';
+
+// Format date for iCalendar (YYYYMMDDTHHMMSSZ)
+function formatICSDate(date: Date): string {
+  return date
+    .toISOString()
+    .replace(/[-:]/g, '')
+    .replace(/\.\d{3}/, '');
+}
+
+// Format date for all-day events (YYYYMMDD)
+function formatICSDateOnly(date: Date): string {
+  return date.toISOString().split('T')[0].replace(/-/g, '');
+}
+
+// Escape special characters for iCalendar
+function escapeICS(text: string): string {
+  return text.replace(/\\/g, '\\\\').replace(/;/g, '\\;').replace(/,/g, '\\,').replace(/\n/g, '\\n');
+}
+
+// Fold long lines (iCal spec: max 75 octets per line)
+function foldLine(line: string): string {
+  const maxLength = 75;
+  let result = '';
+  while (line.length > maxLength) {
+    result += line.substring(0, maxLength) + '\r\n ';
+    line = line.substring(maxLength);
+  }
+  result += line;
+  return result;
+}
+
+export async function GET(context: APIContext) {
+  const events = await getCollection('events');
+
+  const now = new Date();
+  const oneYearAgo = new Date(now.getFullYear() - 1, now.getMonth(), now.getDate());
+
+  // Get events from the past year and all future events, filtered to subsite 'eu'
+  const relevantEvents = events
+    .filter((event) => {
+      const subsites = event.data.subsites;
+      const subsiteList = Array.isArray(subsites) ? subsites : subsites ? [subsites] : [];
+      if (!subsiteList.includes('eu')) return false;
+
+      const eventDate = event.data.date instanceof Date ? event.data.date : new Date(event.data.date || '');
+      return eventDate >= oneYearAgo;
+    })
+    .sort((a, b) => {
+      const dateA = a.data.date instanceof Date ? a.data.date : new Date(a.data.date || 0);
+      const dateB = b.data.date instanceof Date ? b.data.date : new Date(b.data.date || 0);
+      return dateB.getTime() - dateA.getTime(); // Future/recent events first
+    });
+
+  const siteUrl = (context.site?.toString() || 'https://galaxyproject.org').replace(/\/$/, '');
+
+  const icsContent = [
+    'BEGIN:VCALENDAR',
+    'VERSION:2.0',
+    'PRODID:-//Galaxy Project//Galaxy Europe Events Calendar//EN',
+    'CALSCALE:GREGORIAN',
+    'METHOD:PUBLISH',
+    'X-WR-CALNAME:Galaxy Europe Events',
+    'X-WR-CALDESC:Events from the Galaxy Europe community',
+  ];
+
+  for (const event of relevantEvents) {
+    const startDate = event.data.date instanceof Date ? event.data.date : new Date(event.data.date || 0);
+    const endDate = event.data.end instanceof Date ? event.data.end : event.data.end ? new Date(event.data.end) : null;
+
+    // Use end date or default to same day
+    const effectiveEnd = endDate || new Date(startDate.getTime() + 24 * 60 * 60 * 1000);
+
+    let location = '';
+    if (event.data.location) {
+      if (typeof event.data.location === 'string') {
+        location = event.data.location;
+      } else if (event.data.location.name) {
+        location = event.data.location.name;
+      }
+    }
+
+    const uid = `eu-${event.data.slug}@galaxyproject.org`;
+    const slug = event.data.slug || event.id;
+    const pathSlug = slug.startsWith('events/') ? slug : `events/${slug}`;
+    const url = `${siteUrl}/${pathSlug}/`;
+    const title = event.data.title || 'Untitled Event';
+    const description = event.data.tease || '';
+
+    icsContent.push('BEGIN:VEVENT');
+    icsContent.push(foldLine(`UID:${uid}`));
+    icsContent.push(foldLine(`DTSTAMP:${formatICSDate(now)}`));
+    icsContent.push(foldLine(`DTSTART;VALUE=DATE:${formatICSDateOnly(startDate)}`));
+    icsContent.push(foldLine(`DTEND;VALUE=DATE:${formatICSDateOnly(effectiveEnd)}`));
+    icsContent.push(foldLine(`SUMMARY:${escapeICS(title)}`));
+    if (description) {
+      icsContent.push(foldLine(`DESCRIPTION:${escapeICS(description)}`));
+    }
+    if (location) {
+      icsContent.push(foldLine(`LOCATION:${escapeICS(location)}`));
+    }
+    icsContent.push(foldLine(`URL:${url}`));
+    icsContent.push('END:VEVENT');
+  }
+
+  icsContent.push('END:VCALENDAR');
+
+  return new Response(icsContent.join('\r\n'), {
+    headers: {
+      'Content-Type': 'text/calendar; charset=utf-8',
+      'Content-Disposition': 'attachment; filename="galaxy-europe-events.ics"',
+    },
+  });
+}
@@ -0,0 +1,13 @@
+import { describe, expect, it } from 'vitest';
+import { getSubsiteStaticPaths, subsites } from './subsiteStore';
+
+describe('European member subsites', () => {
+  it('registers GenOuest for native subsite routes', () => {
+    expect(subsites).toContainEqual({
+      id: 'genouest',
+      name: 'GenOuest',
+      path: '/genouest/',
+    });
+    expect(getSubsiteStaticPaths().map(({ params }) => params.subsite)).toContain('genouest');
+  });
+});
@@ -12,6 +12,7 @@ export const subsites = [
   { id: 'pasteur', name: 'Pasteur', path: '/pasteur/' },
   { id: 'elixir-it', name: 'ELIXIR-IT', path: '/elixir-it/' },
   { id: 'ifb', name: 'ELIXIR-FR/IFB', path: '/ifb/' },
+  { id: 'genouest', name: 'GenOuest', path: '/genouest/' },
 ] as const;
 
 export type SubsiteId = (typeof subsites)[number]['id'];
@@ -94,6 +95,10 @@ export const subsiteLabels: Record<string, { title: string; description: string
     title: 'Galaxy ELIXIR-FR/IFB',
     description: 'Galaxy resources and news from ELIXIR France / IFB',
   },
+  genouest: {
+    title: 'Galaxy GenOuest',
+    description: 'Galaxy resources and news from the GenOuest bioinformatics platform',
+  },
 };
 
 // Static paths for subsite pages (reused by normal and embed routes)
 
@@ -78,6 +78,7 @@ function parseHallOfFameFlag(flag: unknown, defaultValue = true): boolean {
 function normalizeAvatar(avatar?: string): string | undefined {
   if (!avatar) return undefined;
   if (/^https?:\/\//i.test(avatar)) return avatar;
+  if (/^\/(?:images|assets)\//.test(avatar)) return avatar;
   const trimmed = avatar.replace(/^\/+/, '');
   return `${AVATAR_BASE}/${trimmed}`;
 }
Original file line number	Diff line number	Diff line change
`@@ -78,6 +78,7 @@ function parseHallOfFameFlag(flag: unknown, defaultValue = true): boolean {`
`78`	`78`	`function normalizeAvatar(avatar?: string): string \| undefined {`
`79`	`79`	`if (!avatar) return undefined;`
`80`	`80`	`if (/^https?:\/\//i.test(avatar)) return avatar;`
	`81`	`+ if (/^\/(?:images\|assets)\//.test(avatar)) return avatar;`
`81`	`82`	`const trimmed = avatar.replace(/^\/+/, '');`
`82`	`83`	return `${AVATAR_BASE}/${trimmed}`;
`83`	`84`	`}`