|
| 1 | +--- |
| 2 | +title: "Galaxy 2025 Year in Review" |
| 3 | +date: "2025-12-22" |
| 4 | +tease: "650K+ users, 186M+ jobs, ~15K commits across the ecosystem" |
| 5 | +authors: "Galaxy Project" |
| 6 | +tags: [galaxy, community, statistics, year-in-review] |
| 7 | +subsites: [all] |
| 8 | +--- |
| 9 | + |
| 10 | + |
| 11 | + |
| 12 | +*Image credit: Bob Harris | [bumblebeagle.org/xmas2025](http://www.bumblebeagle.org/xmas2025/)* |
| 13 | + |
| 14 | +See also: [Galaxy Newsletter December 2025](https://galaxyproject.org/news/2025-12-12-galaxy-newsletter/) |
| 15 | + |
| 16 | +2025 was a busy year. Here's what the Galaxy community built: |
| 17 | + |
| 18 | +- Over **14,900 commits** were pushed across Galaxy core, training materials, and tools repositories |
| 19 | +- More than **100 contributors** actively developed Galaxy in 2025 |
| 20 | +- **10 releases** shipped, including Galaxy 25.1, 25.0, and 24.2 |
| 21 | +- The Galaxy Training Network merged **760+ PRs** and received contributions from **57 authors** |
| 22 | + |
| 23 | +## Global Impact |
| 24 | + |
| 25 | +Combined metrics across usegalaxy.org, usegalaxy.eu, usegalaxy.org.au, usegalaxy.fr, and usegalaxy.be: |
| 26 | + |
| 27 | +<table class="table"> |
| 28 | + <tr> |
| 29 | + <td style="width: 50%; background: linear-gradient(135deg, #7a8b10, #90b668); color: white; text-align: center; padding: 15px; border-radius: 8px;"><strong style="font-size: 1.5em;">650K+</strong><br/>registered users</td> |
| 30 | + <td style="width: 50%; background: linear-gradient(135deg, #a89707, #e1d808); color: white; text-align: center; padding: 15px; border-radius: 8px;"><strong style="font-size: 1.5em;">186M+</strong><br/>jobs executed</td> |
| 31 | + </tr> |
| 32 | + <tr> |
| 33 | + <td style="width: 50%; background: linear-gradient(135deg, #9c2a07, #ed7808); color: white; text-align: center; padding: 15px; border-radius: 8px;"><strong style="font-size: 1.5em;">333M+</strong><br/>datasets stored</td> |
| 34 | + <td style="width: 50%; background: linear-gradient(135deg, #3e7b36, #80d281); color: white; text-align: center; padding: 15px; border-radius: 8px;"><strong style="font-size: 1.5em;">862K+</strong><br/>workflows created</td> |
| 35 | + </tr> |
| 36 | + <tr> |
| 37 | + <td style="width: 50%; background: linear-gradient(135deg, #6f265d, #ac55a9); color: white; text-align: center; padding: 15px; border-radius: 8px;"><strong style="font-size: 1.5em;">22,699</strong><br/>publications citing Galaxy</td> |
| 38 | + <td style="width: 50%; background: linear-gradient(135deg, #196e63, #38a89d); color: white; text-align: center; padding: 15px; border-radius: 8px;"><strong style="font-size: 1.5em;">3,574</strong><br/>GTA 2025 trainees</td> |
| 39 | + </tr> |
| 40 | +</table> |
| 41 | + |
| 42 | +### Jobs by Server (2025) |
| 43 | + |
| 44 | +<table class="table"> |
| 45 | + <tr> |
| 46 | + <th>Server</th> |
| 47 | + <th style="text-align: right;">Jobs</th> |
| 48 | + </tr> |
| 49 | + <tr> |
| 50 | + <td>🇪🇺 usegalaxy.eu</td> |
| 51 | + <td style="text-align: right; background-color: #e8f3e6;"><strong style="color: #3e7b36;">93.3M</strong></td> |
| 52 | + </tr> |
| 53 | + <tr> |
| 54 | + <td>🇺🇸 usegalaxy.org</td> |
| 55 | + <td style="text-align: right; background-color: #f5f3e0;"><strong style="color: #7a8b10;">72.9M</strong></td> |
| 56 | + </tr> |
| 57 | + <tr> |
| 58 | + <td>🇦🇺 usegalaxy.org.au</td> |
| 59 | + <td style="text-align: right; background-color: #fdf2e6;"><strong style="color: #ed7808;">13.6M</strong></td> |
| 60 | + </tr> |
| 61 | + <tr> |
| 62 | + <td>🇫🇷 usegalaxy.fr</td> |
| 63 | + <td style="text-align: right; background-color: #e6f0ef;"><strong style="color: #196e63;">6.9M</strong></td> |
| 64 | + </tr> |
| 65 | +</table> |
| 66 | + |
| 67 | +## 2025 Commits by Repository |
| 68 | + |
| 69 | +<table class="table"> |
| 70 | + <tr> |
| 71 | + <th>Repository</th> |
| 72 | + <th style="text-align: right;">Commits</th> |
| 73 | + </tr> |
| 74 | + <tr> |
| 75 | + <td>galaxy</td> |
| 76 | + <td style="text-align: right; background-color: #e8f3e6;"><strong style="color: #3e7b36;">7,554</strong></td> |
| 77 | + </tr> |
| 78 | + <tr> |
| 79 | + <td>training-material</td> |
| 80 | + <td style="text-align: right; background-color: #eef5e8;"><strong style="color: #5a9b4a;">4,974</strong></td> |
| 81 | + </tr> |
| 82 | + <tr> |
| 83 | + <td>tools-iuc</td> |
| 84 | + <td style="text-align: right; background-color: #f4f7ec;"><strong style="color: #80d281;">2,365</strong></td> |
| 85 | + </tr> |
| 86 | +</table> |
| 87 | + |
| 88 | +### Galaxy Core Commits by Month |
| 89 | + |
| 90 | +<vega-embed spec="https://gist.githubusercontent.com/nekrut/ee85b69a80af1a23ba9248b2014343e2/raw/76a2f0c4aa78cad5eef0a65533b6e4bc3b7c3efc/commits-by-month.json" /> |
| 91 | + |
| 92 | +## Infrastructure & Developer Tools |
| 93 | + |
| 94 | +Key ecosystem projects saw significant development in 2025: |
| 95 | + |
| 96 | +### Total Perspective Vortex v3.0 |
| 97 | + |
| 98 | +Major release with Pydantic schema support, type-checking linter for embedded Python code, and multi-file config support. 162 commits, 28 PRs, 6 releases. |
| 99 | + |
| 100 | +[View project →](https://github.com/galaxyproject/total-perspective-vortex) |
| 101 | + |
| 102 | +### Galaxy Charts |
| 103 | + |
| 104 | +New visualization framework launched in 2024, with 244 commits in 2025 adding conditional support, dataset extensions, and Vite 7 upgrade. |
| 105 | + |
| 106 | +[View project →](https://github.com/galaxyproject/galaxy-charts) |
| 107 | + |
| 108 | +### Developer Tool Activity |
| 109 | + |
| 110 | +| Tool | Activity | |
| 111 | +|------|----------| |
| 112 | +| planemo | 259 commits, 63 PRs, 7 releases | |
| 113 | +| pulsar | 135 commits, 33 PRs, 6 releases | |
| 114 | + |
| 115 | +## Galaxy Workflows |
| 116 | + |
| 117 | +The [Intergalactic Workflow Commission (IWC)](https://iwc.galaxyproject.org/) maintains peer-reviewed, production-ready workflows: |
| 118 | + |
| 119 | +<table class="table"> |
| 120 | + <tr> |
| 121 | + <td style="text-align: center; padding: 15px;"><strong style="font-size: 1.5em; color: #6f265d;">25</strong><br/>workflow categories</td> |
| 122 | + <td style="text-align: center; padding: 15px;"><strong style="font-size: 1.5em; color: #9c2a07;">270</strong><br/>PRs merged in 2025</td> |
| 123 | + <td style="text-align: center; padding: 15px;"><strong style="font-size: 1.5em; color: #3e7b36;">1,251</strong><br/>commits in 2025</td> |
| 124 | + </tr> |
| 125 | +</table> |
| 126 | + |
| 127 | +### VGP Assembly v2 |
| 128 | + |
| 129 | +Complete 5-step pipeline for high-quality vertebrate genome assembly. Features Hifiasm phased assembly and Hi-C scaffolding for chromosome-scale results. |
| 130 | + |
| 131 | +[View workflow →](https://github.com/galaxyproject/iwc/tree/main/workflows/VGP-assembly-v2) |
| 132 | + |
| 133 | +### Single-Cell RNA-seq Analysis |
| 134 | + |
| 135 | +Community-maintained pipeline for single-cell transcriptomics. Peer-reviewed and production-ready for your research needs. |
| 136 | + |
| 137 | +[View workflow →](https://github.com/galaxyproject/iwc/tree/main/workflows/scRNAseq) |
| 138 | + |
| 139 | +## Release Highlights |
| 140 | + |
| 141 | +### Galaxy 25.1 (December 2025) |
| 142 | + |
| 143 | +- Modern card-based history interface with keyboard navigation |
| 144 | +- Powerful Sample Sheets for complex workflow inputs |
| 145 | +- Enhanced tool discovery capabilities |
| 146 | + |
| 147 | +### Galaxy 25.0 (June 2025) |
| 148 | + |
| 149 | +- JupyterLite integration for browser-based notebooks |
| 150 | +- ZIP archive explorer for remote and local files |
| 151 | +- New visualizations: Vizarr, Molstar, Kepler.gl, Niivue |
| 152 | + |
| 153 | +### Galaxy 24.2 (January 2025) |
| 154 | + |
| 155 | +- ChatGXY AI assistant for job error diagnosis |
| 156 | +- Job metrics dashboard for runtime and memory insights |
| 157 | + |
| 158 | +[Read full release notes →](https://docs.galaxyproject.org/en/latest/releases/) |
| 159 | + |
| 160 | +## Community Events |
| 161 | + |
| 162 | +### European Galaxy Days 2025 |
| 163 | + |
| 164 | +October 2025, Freiburg — Recordings now available |
| 165 | + |
| 166 | +[Watch recordings](https://galaxyproject.org/events/2025-european-galaxy-days/) |
| 167 | + |
| 168 | +### GCC2026 Save the Date |
| 169 | + |
| 170 | +June 2026, Clermont-Ferrand, France |
| 171 | + |
| 172 | +[Learn more](https://galaxyproject.org/gcc/) |
| 173 | + |
| 174 | +## Community Growth |
| 175 | + |
| 176 | +- **Tool Developers SIG** formed to standardize best practices |
| 177 | +- **57 contributors** to the Galaxy Training Network in 2025 |
| 178 | +- **Global training academies** connecting researchers worldwide |
| 179 | + |
| 180 | +--- |
| 181 | + |
| 182 | +**Connect with Galaxy:** |
| 183 | +[Mastodon @galaxyproject](https://mstdn.science/@galaxyproject) | |
| 184 | +[Mastodon @galaxyfreiburg](https://social.bund.de/@galaxyfreiburg) | |
| 185 | +[Matrix](https://matrix.to/#/#usegalaxy-eu-announce:matrix.org) | |
| 186 | +[Bluesky](https://bsky.app/profile/galaxyproject.bsky.social) | |
| 187 | +[LinkedIn](https://www.linkedin.com/groups/4907635/) |
| 188 | + |
| 189 | +[galaxyproject.org](https://galaxyproject.org) | [Training](https://training.galaxyproject.org) | [Docs](https://docs.galaxyproject.org) |
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