Create version 24.2.0

jdavcs · jdavcs · commit 490257d237a9 · 2025-02-11T20:36:31.000-05:00
This is the final version 24.2.0.
It contains the content generated by the release script, minus the
duplicate content (which resulted from the existing 24.2.0 changelogs
that had been pushed upstream on 2/6/25).
diff --git a/lib/galaxy/version.py b/lib/galaxy/version.py
@@ -1,3 +1,3 @@
 VERSION_MAJOR = "24.2"
-VERSION_MINOR = "1.dev0"
+VERSION_MINOR = "0"
 VERSION = VERSION_MAJOR + (f".{VERSION_MINOR}" if VERSION_MINOR else "")
diff --git a/packages/app/HISTORY.rst b/packages/app/HISTORY.rst
@@ -3,14 +3,8 @@ History
 
 .. to_doc
 
------------
-24.2.1.dev0
------------
-
-
-
 -------------------
-24.2.0 (2025-02-06)
+24.2.0 (2025-02-11)
 -------------------
 
 
@@ -61,6 +55,7 @@ Bug fixes
 * Fix remap for parameter called id by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19532 <https://github.com/galaxyproject/galaxy/pull/19532>`_
 * Fix admin cancel job message not being displayed to the user by `@davelopez <https://github.com/davelopez>`_ in `#19537 <https://github.com/galaxyproject/galaxy/pull/19537>`_
 * Use instance wide default ``real_system_username`` if not defined on destination by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#19544 <https://github.com/galaxyproject/galaxy/pull/19544>`_
+* Fix job paused on user defined object store by `@davelopez <https://github.com/davelopez>`_ in `#19578 <https://github.com/galaxyproject/galaxy/pull/19578>`_
 
 ============
 Enhancements
diff --git a/packages/app/setup.cfg b/packages/app/setup.cfg
@@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst
 long_description_content_type = text/x-rst
 name = galaxy-app
 url = https://github.com/galaxyproject/galaxy
-version = 24.2.1.dev0
+version = 24.2.0
 
 [options]
 include_package_data = True
diff --git a/packages/auth/HISTORY.rst b/packages/auth/HISTORY.rst
@@ -3,14 +3,8 @@ History
 
 .. to_doc
 
------------
-24.2.1.dev0
------------
-
-
-
 -------------------
-24.2.0 (2025-02-06)
+24.2.0 (2025-02-11)
 -------------------
 
 No recorded changes since last release
diff --git a/packages/auth/setup.cfg b/packages/auth/setup.cfg
@@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst
 long_description_content_type = text/x-rst
 name = galaxy-auth
 url = https://github.com/galaxyproject/galaxy
-version = 24.2.1.dev0
+version = 24.2.0
 
 [options]
 include_package_data = True
diff --git a/packages/config/HISTORY.rst b/packages/config/HISTORY.rst
@@ -3,14 +3,8 @@ History
 
 .. to_doc
 
------------
-24.2.1.dev0
------------
-
-
-
 -------------------
-24.2.0 (2025-02-06)
+24.2.0 (2025-02-11)
 -------------------
 
 
diff --git a/packages/config/setup.cfg b/packages/config/setup.cfg
@@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst
 long_description_content_type = text/x-rst
 name = galaxy-config
 url = https://github.com/galaxyproject/galaxy
-version = 24.2.1.dev0
+version = 24.2.0
 
 [options]
 include_package_data = True
diff --git a/packages/data/HISTORY.rst b/packages/data/HISTORY.rst
@@ -3,14 +3,8 @@ History
 
 .. to_doc
 
------------
-24.2.1.dev0
------------
-
-
-
 -------------------
-24.2.0 (2025-02-06)
+24.2.0 (2025-02-11)
 -------------------
 
 
@@ -37,6 +31,8 @@ Bug fixes
 * Add tool_id index on job table by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19543 <https://github.com/galaxyproject/galaxy/pull/19543>`_
 * Update 24.2 db revision tags by `@jdavcs <https://github.com/jdavcs>`_ in `#19550 <https://github.com/galaxyproject/galaxy/pull/19550>`_
 * Provide guidance in case of deadlock during db migration by `@jdavcs <https://github.com/jdavcs>`_ in `#19551 <https://github.com/galaxyproject/galaxy/pull/19551>`_
+* Fix job paused on user defined object store by `@davelopez <https://github.com/davelopez>`_ in `#19578 <https://github.com/galaxyproject/galaxy/pull/19578>`_
+* Handle isatools dependency by `@jdavcs <https://github.com/jdavcs>`_ in `#19582 <https://github.com/galaxyproject/galaxy/pull/19582>`_
 
 ============
 Enhancements
@@ -87,6 +83,7 @@ Other changes
 * Merge 24.1 by `@jdavcs <https://github.com/jdavcs>`_ in `#18386 <https://github.com/galaxyproject/galaxy/pull/18386>`_
 * Format dev to fix linting. by `@jmchilton <https://github.com/jmchilton>`_ in `#18860 <https://github.com/galaxyproject/galaxy/pull/18860>`_
 * Add 24.2 migration tags by `@jdavcs <https://github.com/jdavcs>`_ in `#19169 <https://github.com/galaxyproject/galaxy/pull/19169>`_
+* Fix type annotations for pysam 0.23.0 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19571 <https://github.com/galaxyproject/galaxy/pull/19571>`_
 
 -------------------
 24.1.4 (2024-12-11)
diff --git a/packages/data/setup.cfg b/packages/data/setup.cfg
@@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst
 long_description_content_type = text/x-rst
 name = galaxy-data
 url = https://github.com/galaxyproject/galaxy
-version = 24.2.1.dev0
+version = 24.2.0
 
 [options]
 include_package_data = True
diff --git a/packages/files/HISTORY.rst b/packages/files/HISTORY.rst
@@ -3,14 +3,8 @@ History
 
 .. to_doc
 
------------
-24.2.1.dev0
------------
-
-
-
 -------------------
-24.2.0 (2025-02-06)
+24.2.0 (2025-02-11)
 -------------------
 
 
diff --git a/packages/files/setup.cfg b/packages/files/setup.cfg
@@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst
 long_description_content_type = text/x-rst
 name = galaxy-files
 url = https://github.com/galaxyproject/galaxy
-version = 24.2.1.dev0
+version = 24.2.0
 
 [options]
 include_package_data = True
diff --git a/packages/job_execution/HISTORY.rst b/packages/job_execution/HISTORY.rst
@@ -3,14 +3,8 @@ History
 
 .. to_doc
 
------------
-24.2.1.dev0
------------
-
-
-
 -------------------
-24.2.0 (2025-02-06)
+24.2.0 (2025-02-11)
 -------------------
 
 
diff --git a/packages/job_execution/setup.cfg b/packages/job_execution/setup.cfg
@@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst
 long_description_content_type = text/x-rst
 name = galaxy-job-execution
 url = https://github.com/galaxyproject/galaxy
-version = 24.2.1.dev0
+version = 24.2.0
 
 [options]
 include_package_data = True
diff --git a/packages/job_metrics/HISTORY.rst b/packages/job_metrics/HISTORY.rst
@@ -3,14 +3,8 @@ History
 
 .. to_doc
 
------------
-24.2.1.dev0
------------
-
-
-
 -------------------
-24.2.0 (2025-02-06)
+24.2.0 (2025-02-11)
 -------------------
 
 
diff --git a/packages/job_metrics/setup.cfg b/packages/job_metrics/setup.cfg
@@ -29,7 +29,7 @@ long_description = file: README.rst, HISTORY.rst
 long_description_content_type = text/x-rst
 name = galaxy-job-metrics
 url = https://github.com/galaxyproject/galaxy
-version = 24.2.1.dev0
+version = 24.2.0
 
 [options]
 include_package_data = True
diff --git a/packages/navigation/HISTORY.rst b/packages/navigation/HISTORY.rst
@@ -3,14 +3,8 @@ History
 
 .. to_doc
 
------------
-24.2.1.dev0
------------
-
-
-
 -------------------
-24.2.0 (2025-02-06)
+24.2.0 (2025-02-11)
 -------------------
 
 No recorded changes since last release
diff --git a/packages/navigation/setup.cfg b/packages/navigation/setup.cfg
@@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst
 long_description_content_type = text/x-rst
 name = galaxy-navigation
 url = https://github.com/galaxyproject/galaxy
-version = 24.2.1.dev0
+version = 24.2.0
 
 [options]
 include_package_data = True
diff --git a/packages/objectstore/HISTORY.rst b/packages/objectstore/HISTORY.rst
@@ -3,14 +3,8 @@ History
 
 .. to_doc
 
------------
-24.2.1.dev0
------------
-
-
-
 -------------------
-24.2.0 (2025-02-06)
+24.2.0 (2025-02-11)
 -------------------
 
 
diff --git a/packages/objectstore/setup.cfg b/packages/objectstore/setup.cfg
@@ -29,7 +29,7 @@ long_description = file: README.rst, HISTORY.rst
 long_description_content_type = text/x-rst
 name = galaxy-objectstore
 url = https://github.com/galaxyproject/galaxy
-version = 24.2.1.dev0
+version = 24.2.0
 
 [options]
 include_package_data = True
diff --git a/packages/schema/HISTORY.rst b/packages/schema/HISTORY.rst
@@ -3,14 +3,8 @@ History
 
 .. to_doc
 
------------
-24.2.1.dev0
------------
-
-
-
 -------------------
-24.2.0 (2025-02-06)
+24.2.0 (2025-02-11)
 -------------------
 
 
diff --git a/packages/schema/setup.cfg b/packages/schema/setup.cfg
@@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst
 long_description_content_type = text/x-rst
 name = galaxy-schema
 url = https://github.com/galaxyproject/galaxy
-version = 24.2.1.dev0
+version = 24.2.0
 
 [options]
 include_package_data = True
diff --git a/packages/selenium/HISTORY.rst b/packages/selenium/HISTORY.rst
@@ -3,14 +3,8 @@ History
 
 .. to_doc
 
------------
-24.2.1.dev0
------------
-
-
-
 -------------------
-24.2.0 (2025-02-06)
+24.2.0 (2025-02-11)
 -------------------
 
 
diff --git a/packages/selenium/setup.cfg b/packages/selenium/setup.cfg
@@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst
 long_description_content_type = text/x-rst
 name = galaxy-selenium
 url = https://github.com/galaxyproject/galaxy
-version = 24.2.1.dev0
+version = 24.2.0
 
 [options]
 include_package_data = True
diff --git a/packages/test_api/HISTORY.rst b/packages/test_api/HISTORY.rst
@@ -3,14 +3,8 @@ History
 
 .. to_doc
 
------------
-24.2.1.dev0
------------
-
-
-
 -------------------
-24.2.0 (2025-02-06)
+24.2.0 (2025-02-11)
 -------------------
 
 
diff --git a/packages/test_api/setup.cfg b/packages/test_api/setup.cfg
@@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst
 long_description_content_type = text/x-rst
 name = galaxy-test-api
 url = https://github.com/galaxyproject/galaxy
-version = 24.2.1.dev0
+version = 24.2.0
 
 [options]
 include_package_data = True
diff --git a/packages/test_base/HISTORY.rst b/packages/test_base/HISTORY.rst
@@ -3,14 +3,8 @@ History
 
 .. to_doc
 
------------
-24.2.1.dev0
------------
-
-
-
 -------------------
-24.2.0 (2025-02-06)
+24.2.0 (2025-02-11)
 -------------------
 
 
diff --git a/packages/test_base/setup.cfg b/packages/test_base/setup.cfg
@@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst
 long_description_content_type = text/x-rst
 name = galaxy-test-base
 url = https://github.com/galaxyproject/galaxy
-version = 24.2.1.dev0
+version = 24.2.0
 
 [options]
 include_package_data = True
diff --git a/packages/test_driver/HISTORY.rst b/packages/test_driver/HISTORY.rst
@@ -3,14 +3,8 @@ History
 
 .. to_doc
 
------------
-24.2.1.dev0
------------
-
-
-
 -------------------
-24.2.0 (2025-02-06)
+24.2.0 (2025-02-11)
 -------------------
 
 
diff --git a/packages/test_driver/setup.cfg b/packages/test_driver/setup.cfg
@@ -28,7 +28,7 @@ long_description = file: README.rst, HISTORY.rst
 long_description_content_type = text/x-rst
 name = galaxy-test-driver
 url = https://github.com/galaxyproject/galaxy
-version = 24.2.1.dev0
+version = 24.2.0
 
 [options]
 include_package_data = True
diff --git a/packages/tool_shed/HISTORY.rst b/packages/tool_shed/HISTORY.rst
@@ -3,14 +3,8 @@ History
 
 .. to_doc
 
------------
-24.2.1.dev0
------------
-
-
-
 -------------------
-24.2.0 (2025-02-06)
+24.2.0 (2025-02-11)
 -------------------
 
 
diff --git a/packages/tool_shed/setup.cfg b/packages/tool_shed/setup.cfg
diff --git a/packages/tool_util/HISTORY.rst b/packages/tool_util/HISTORY.rst
diff --git a/packages/tool_util/setup.cfg b/packages/tool_util/setup.cfg
diff --git a/packages/tours/HISTORY.rst b/packages/tours/HISTORY.rst
diff --git a/packages/tours/setup.cfg b/packages/tours/setup.cfg
diff --git a/packages/util/HISTORY.rst b/packages/util/HISTORY.rst
diff --git a/packages/util/setup.cfg b/packages/util/setup.cfg
diff --git a/packages/web_apps/HISTORY.rst b/packages/web_apps/HISTORY.rst
diff --git a/packages/web_apps/setup.cfg b/packages/web_apps/setup.cfg
diff --git a/packages/web_framework/HISTORY.rst b/packages/web_framework/HISTORY.rst
diff --git a/packages/web_framework/setup.cfg b/packages/web_framework/setup.cfg
diff --git a/packages/web_stack/HISTORY.rst b/packages/web_stack/HISTORY.rst
diff --git a/packages/web_stack/setup.cfg b/packages/web_stack/setup.cfg
