training-material/topics/genome-annotation/tutorials/genome-annotation-comparison-visualization/data-library.yaml at 5f61bdc1a0618093e68e69c801bb6cf7a999257e · galaxyproject/training-material · GitHub

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---
destination:
  type: library
  name: GTN - Material
  description: Galaxy Training Network Material
  synopsis: Galaxy Training Network Material. See https://training.galaxyproject.org
items:
- name: Genome Annotation
  description: In this tutorial, you will perform a complete workflow for fungal genome annotation, comparative genomics, and visualization. Starting from raw Mucor mucedo genomic and RNA-seq data, you will run Funannotate to generate structural and functional annotations. The predicted proteome is then compared with complete proteomes from related Mucor species and Saccharomyces cerevisiae using OrthoFinder to identify orthogroups and assess evolutionary relationships. Finally, the annotated genome and comparative results are explored and visualized using JBrowse2 for interactive genome browsing and Circos to display synteny and genomic relationships.
  items:
  - name: Genome annotation (Funannotate), comparison (OrthoFinder) and visualization
      (JBrowse2 & Circos) [Galaxy Training Material]
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