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Merge pull request #6087 from Delphine-L/prottypo
fix typo in MaxQuant and MSstats for the analysis of label-free data
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events/tracks/gta2024-assembly.md

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@@ -24,7 +24,7 @@ contributions:
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program:
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- section: "Introduction"
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description: |
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In this section, we will introduce what is a genome assembly, how it works, and the metrics to evaluate the quality of an assembly.
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In this section, we will introduce what a genome assembly is, how it works, and the metrics to evaluate the quality of an assembly. **Warning: The QC training uses large data. For a lighter, faster version, follow the video and only use the sponge data**
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tutorials:
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- type: custom
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name: "[Introduction To Genome Assembly](https://youtu.be/9WZe7VGtr-k)"

topics/proteomics/tutorials/maxquant-msstats-dda-lfq/tutorial.md

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@@ -411,11 +411,11 @@ For each condition we select only the significant proteins, which are proteins w
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> - {% icon param-file %} *"Filter"*: `rdeb filtered` (output of **Filter** {% icon tool %})
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> - *"With following condition"*: `c8>0`
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> - *"Number of header lines to skip"*: `1`
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> - Rename the file into `rdeb rdeb`
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> - Rename the file into `significant rdeb`
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> 4. {% tool [Cut](Cut1) %} with the following parameters:
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> - *"Cut columns"*: `c1`
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> - {% icon param-file %} *"From"*: `significant rdeb` (output of last **Filter** {% icon tool %})
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> - Rename the file into `metastasized cut`
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> - Rename the file into `rdeb cut`
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> 5. {% tool [Replace Text in a specific column](toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_column/1.1.3) %} with the following parameters:
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> - {% icon param-file %} *"File to process"*: `Sample Quantification Matrix` (output of **MSstats** {% icon tool %})
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> - In *"Replacement"*:

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