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* If you are summarizing by **exon**, your annotation should contain exon features (3rd column)
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- Sometimes these tools do not understand `transcript_id.N` and `gene_id.N` notation (where N is a version number).
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* This notation could be in fasta or tabular inputs.
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* Try [removing `.N` from all inputs]({% link search2.html %}?query=olympics), and check for the accidential creation of new duplicates!
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* Try [removing `.N` from all inputs]({% link search2.html %}?query=olympics), and check for the accidental creation of new duplicates!
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- Errors? [Understanding the job log messages]({% link faqs/galaxy/analysis_troubleshooting.md %}) can be confusing! But are accessible and worth reviewing.
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* The good news is that usage in Galaxy produces the same error messages as direct usage.
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* This means that a search at the [Bioconductor Support](https://support.bioconductor.org/) website can provide useful clues! Come back to the [Galaxy Help](https://help.galaxyproject.org/) forum with any remaining questions.
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