Merge pull request #9 from gboeing/update

Update to v0.3.3

Author: gboeing

.github/workflows/tests.yml

@@ -1,3 +1,4 @@
+# This workflow runs the repo's CI tests.
 name: tests
 
 on:
@@ -16,42 +17,29 @@ jobs:
       fail-fast: false
       matrix:
         os: [ubuntu-latest]
-        python-version: ['3.8', '3.9', '3.10']
+        python-version: ['3.8', '3.9', '3.10', '3.11', '3.12', '3.13']
 
     defaults:
       run:
-        shell: bash -l {0}
+        shell: bash -elo pipefail {0}
 
     steps:
-
       - name: Checkout repo
-        uses: actions/checkout@v2
-        with:
-          fetch-depth: 2
-
-      - name: Cache conda
-        uses: actions/cache@v2
-        env:
-          CACHE_NUMBER: 0
-        with:
-          path: ~/conda_pkgs_dir
-          key: ${{ runner.os }}-python-${{ matrix.python-version }}-${{ env.CACHE_NUMBER }}-${{ hashFiles('tests/environment-dev.yml') }}
+        uses: actions/checkout@v4
 
-      - name: Setup conda environment
-        uses: conda-incubator/setup-miniconda@v2
+      - name: Create environment with Micromamba
+        uses: mamba-org/setup-micromamba@v2
         with:
-          python-version: ${{ matrix.python-version }}
-          use-only-tar-bz2: true  # required for caching
-          show-channel-urls: true
-          channel-priority: strict
-          activate-environment: pynamical-dev
+          cache-environment: true
+          create-args: python=${{ matrix.python-version }}
           environment-file: tests/environment-dev.yml
 
       - name: Install pynamical
         run: |
-          python setup.py install
-          conda list
-          conda info --all
+          python -m pip install .
+          python -m pip check
+          micromamba list
+          python -m pip show pynamical
 
       - name: Lint code
         run: |

.readthedocs.yaml

@@ -0,0 +1,10 @@
+version: 2
+
+build:
+  os: ubuntu-lts-latest
+  tools:
+    python: '3.12'
+
+sphinx:
+  configuration: docs/source/conf.py
+  fail_on_warning: false

CHANGELOG.md

@@ -1,4 +1,11 @@
-# Change log
+# Changelog
+
+## 0.3.3 (2025-04-15)
+
+  - final expected release of package
+  - pin max version of dependencies
+  - update dependencies compatibility
+  - support python version 3.8-3.13
 
 ## 0.3.2 (2022-05-23)
 

LICENSE.txt

@@ -1,6 +1,6 @@
 The MIT License (MIT)
 
-Copyright (c) 2015-2022 Geoff Boeing https://geoffboeing.com/
+Copyright (c) 2015-2025 Geoff Boeing https://geoffboeing.com/
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

README.md

@@ -1,7 +1,7 @@
 [![PyPI Version](https://badge.fury.io/py/pynamical.svg)](https://badge.fury.io/py/pynamical)
 [![Anaconda Downloads](https://anaconda.org/conda-forge/pynamical/badges/downloads.svg)](https://anaconda.org/conda-forge/pynamical)
 [![Documentation Status](https://readthedocs.org/projects/pynamical/badge/?version=latest)](https://pynamical.readthedocs.io/)
-[![Build Status](https://github.com/gboeing/pynamical/workflows/tests/badge.svg?branch=main)](https://github.com/gboeing/pynamical/actions?query=workflow%3A%22tests%22)
+[![Build Status](https://github.com/gboeing/pynamical/workflows/tests/badge.svg?branch=main)](https://github.com/gboeing/pynamical/actions/workflows/tests.yml/badge.svg?branch=main)
 [![Coverage Status](https://codecov.io/gh/gboeing/pynamical/branch/main/graph/badge.svg)](https://codecov.io/gh/gboeing/pynamical)
 
 # pynamical

docs/source/conf.py

@@ -61,13 +61,13 @@
 
 # General information about the project.
 project = "pynamical"
-copyright = "2015-2022, Geoff Boeing"
+copyright = "2015-2025, Geoff Boeing"
 author = "Geoff Boeing"
 
 # The version info for the project you're documenting, acts as replacement for
 # |version| and |release|, also used in various other places throughout the
 # built documents.
-version = release = "0.3.2"
+version = release = "0.3.3"
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

pynamical/__init__.py

@@ -2,4 +2,4 @@
 
 from .pynamical import *
 
-__version__ = "0.3.2"
+__version__ = "0.3.3"

pynamical/pynamical.py

@@ -2,7 +2,6 @@
 
 import os
 
-import matplotlib.cm as cm
 import matplotlib.font_manager as fm
 import matplotlib.pyplot as plt
 import numpy as np
@@ -585,7 +584,7 @@ def get_phase_colors(color_request, length=1, color_reverse=False, default_color
         else:
             # if it's more than 1 character and doesn't start with # then it's
             # the name of a colormap
-            color_map = cm.get_cmap(color_request)
+            color_map = plt.get_cmap(color_request)
             color_list = color_map([x / float(length) for x in range(length)]).tolist()
 
     # make sure list is same length as specified in length argument - if not,
@@ -953,7 +952,7 @@ def phase_diagram_3d(
 
     # create new figure, set its size, and create an axis with 3-D projection
     fig = plt.figure(figsize=figsize)
-    ax = fig.gca(projection="3d")
+    ax = fig.add_subplot(projection="3d")
     ax.xaxis.set_pane_color((1, 1, 1, 1))
     ax.yaxis.set_pane_color((1, 1, 1, 1))
     ax.zaxis.set_pane_color((1, 1, 1, 1))

requirements.txt

@@ -1,4 +1,4 @@
-matplotlib>=3.5
-numba>=0.53
-numpy>=1.20,<1.22
-pandas>=1.3
+matplotlib>=3.5,<3.11
+numba>=0.53,<0.62
+numpy>=1.20,<2.3
+pandas>=1.3,<2.3

setup.py

@@ -36,6 +36,9 @@
     "Programming Language :: Python :: 3.8",
     "Programming Language :: Python :: 3.9",
     "Programming Language :: Python :: 3.10",
+    "Programming Language :: Python :: 3.11",
+    "Programming Language :: Python :: 3.12",
+    "Programming Language :: Python :: 3.13",
 ]
 
 # only specify install_requires if not in RTD environment
@@ -47,7 +50,7 @@
 
 setup(
     name="pynamical",
-    version="0.3.2",
+    version="0.3.3",
     description="Model, simulate, and visualize discrete nonlinear dynamical systems",
     long_description=LONG_DESCRIPTION,
     classifiers=CLASSIFIERS,
@@ -57,6 +60,6 @@
     license="MIT",
     platforms="any",
     packages=["pynamical"],
-    python_requires=">=3.8",
+    python_requires=">=3.8,<3.14",
     install_requires=INSTALL_REQUIRES,
 )