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Reducing number of pdb files generated during algorithm runs. #14

@siddharth7113

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@siddharth7113

Currently during the 40-nt iteration the loop creates ttthe following files :

for a 40-nt aptamer (N_NTIDES ≈ 40):
Step 1 candidates: 4
Step 1 best: 1
Steps 2..40 candidates: 39 × 4 = 156
Steps 2..40 best: 39
RESULT: 1
STEP CACHE: 1 (multi-model)

≈ 202 PDB files per run.

Aim to reduce this to 2 :
1 final result file.
1 Step cache files
and rest of it are irrelvant and instead of details should be present in logs.

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