Merge remote-tracking branch 'upstream/main'

Author: gdibble

CHANGELOG.md

@@ -5,6 +5,10 @@
 ### Fixes
 
 - GPU: respect explicit `QMD_LLAMA_GPU=metal|vulkan|cuda` backend overrides instead of always using auto GPU selection. #529
+- Fix: preserve original filename case in `handelize()`. The previous
+  `.toLowerCase()` call made indexed paths unreachable on case-sensitive
+  filesystems (Linux). `qmd update` automatically migrates legacy
+  lowercase paths without re-embedding.
 
 ## [2.1.0] - 2026-04-05
 

finetune/pyproject.toml

@@ -21,3 +21,10 @@ dependencies = [
 
 [dependency-groups]
 dev = []
+
+[tool.uv]
+constraint-dependencies = [
+  "authlib>=1.6.9",
+  "aiohttp>=3.13.4",
+  "cryptography>=46.0.7",
+]

finetune/uv.lock

@@ -45,6 +45,7 @@ import {
   insertContent,
   insertDocument,
   findActiveDocument,
+  findOrMigrateLegacyDocument,
   updateDocumentTitle,
   updateDocument,
   deactivateDocument,
@@ -110,6 +111,7 @@ enableProductionMode();
 
 let store: ReturnType<typeof createStore> | null = null;
 let storeDbPathOverride: string | undefined;
+let currentIndexName = "index";
 
 function getStore(): ReturnType<typeof createStore> {
   if (!store) {
@@ -160,6 +162,10 @@ function getDbPath(): string {
   return store?.dbPath ?? storeDbPathOverride ?? getDefaultDbPath();
 }
 
+function getActiveIndexName(): string {
+  return currentIndexName;
+}
+
 function setIndexName(name: string | null): void {
   let normalizedName = name;
   // Normalize relative paths to prevent malformed database paths
@@ -170,6 +176,7 @@ function setIndexName(name: string | null): void {
     // Replace path separators with underscores to create a valid filename
     normalizedName = absolutePath.replace(/\//g, '_').replace(/^_/, '');
   }
+  currentIndexName = normalizedName || "index";
   storeDbPathOverride = normalizedName ? getDefaultDbPath(normalizedName) : undefined;
   // Reset open handle so next use opens the new index
   closeDb();
@@ -821,8 +828,6 @@ function contextRemove(pathArg: string): void {
 }
 
 function getDocument(filename: string, fromLine?: number, maxLines?: number, lineNumbers?: boolean): void {
-  const db = getDb();
-
   // Parse :linenum suffix from filename (e.g., "file.md:100")
   let inputPath = filename;
   const colonMatch = inputPath.match(/:(\d+)$/);
@@ -834,6 +839,14 @@ function getDocument(filename: string, fromLine?: number, maxLines?: number, lin
     }
   }
 
+  const parsedIndexPath = isVirtualPath(inputPath) ? parseVirtualPath(inputPath) : null;
+  if (parsedIndexPath?.indexName) {
+    setIndexName(parsedIndexPath.indexName);
+    setConfigIndexName(parsedIndexPath.indexName);
+  }
+
+  const db = getDb();
+
   // Handle docid lookup (#abc123, abc123, "#abc123", "abc123", etc.)
   if (isDocid(inputPath)) {
     const docidMatch = findDocumentByDocid(db, inputPath);
@@ -845,7 +858,6 @@ function getDocument(filename: string, fromLine?: number, maxLines?: number, lin
       process.exit(1);
     }
   }
-
   let doc: { collectionName: string; path: string; body: string } | null = null;
   let virtualPath: string;
 
@@ -1570,8 +1582,8 @@ async function indexFiles(pwd?: string, globPattern: string = DEFAULT_GLOB, coll
     const hash = await hashContent(content);
     const title = extractTitle(content, relativeFile);
 
-    // Check if document exists in this collection with this path
-    const existing = findActiveDocument(db, collectionName, path);
+    // Check if document exists (also migrates legacy lowercase paths)
+    const existing = findOrMigrateLegacyDocument(db, collectionName, path);
 
     if (existing) {
       if (existing.hash === hash) {
@@ -1928,7 +1940,18 @@ function outputResults(results: OutputRow[], query: string, opts: OutputOptions)
   }
 
   // Helper to create qmd:// URI from displayPath
-  const toQmdPath = (displayPath: string) => `qmd://${displayPath}`;
+  const toQmdPath = (displayPath: string) => {
+    const [collectionName, ...segments] = displayPath.split("/");
+    if (!collectionName || segments.length === 0) {
+      return `qmd://${displayPath}`;
+    }
+    const indexName = getActiveIndexName();
+    return buildVirtualPath(
+      collectionName,
+      segments.join("/"),
+      indexName === "index" ? undefined : indexName,
+    );
+  };
 
   if (opts.format === "json") {
     // JSON output for LLM consumption