Merge branch 'main' of git@github.com:genepi/imputationserver-utils.git into main

Author: lukfor

README.md

@@ -1,38 +1,3 @@
-![Imputationserver Logo](logo.png)
+# Imputationserver Utils
 
-[![Publication](https://img.shields.io/badge/Published-Nature%20Genetics-26af64.svg?colorB=26af64&style=popout)](https://www.nature.com/articles/ng.3656)
-[![Michigan Imputation Server](https://github.com/genepi/imputationserver/actions/workflows/run-tests.yml/badge.svg)](https://github.com/genepi/imputationserver/actions/workflows/run-tests.yml)
-[![codecov](https://codecov.io/gh/genepi/imputationserver/branch/master/graph/badge.svg)](https://codecov.io/gh/genepi/imputationserver)
- <a href="https://twitter.com/intent/follow?screen_name=umimpute"> <img src="https://img.shields.io/twitter/follow/umimpute.svg?style=social" alt="follow on Twitter"></a>
-
-This repository includes the complete source code for the [Michigan Imputation Server](https://imputationserver.sph.umich.edu) workflow based on Minimac4.
-The workflow itself is executed with the [Cloudgene workflow system](https://github.com/genepi/cloudgene) for Hadoop MapReduce.
-
-Michigan Imputation Server consists of several parallelized pipeline steps:
-
-- Quality Control
-- QC Report
-- Phasing and Imputation
-- Compression and Encryption
-
-## Documentation
-The documentation is available at http://imputationserver.readthedocs.io.
-
-## Citation
-Please cite this paper if you use Michigan Imputation Server:
-
-> Das S, Forer L, Schönherr S, Sidore C, Locke AE, Kwong A, Vrieze S, Chew EY, Levy S, McGue M, Schlessinger D, Stambolian D, Loh PR, Iacono WG, Swaroop A, Scott LJ, Cucca F, Kronenberg F, Boehnke M, Abecasis GR, Fuchsberger C. [Next-generation genotype imputation service and methods](https://www.ncbi.nlm.nih.gov/pubmed/27571263). Nature Genetics 48, 1284–1287 (2016).
-
-## Contact
-
-Feel free to contact [us](https://imputationserver.sph.umich.edu/index.html#!pages/contact) in case of any problems.
-
-## Contributors
-
-- Lukas Forer
-- Sebastian Schönherr
-- Sayantan Das
-- Christian Fuchsberger
-
-## Contributing
-Project contributions are more than welcome! See our [CONTRIBUTING.md](CONTRIBUTING.md) file for details.
+Input Validation and Quality Control tools from Imputationserver