v0.8.14 — Streamable HTTP docs, demo, and release polish

What's new in v0.8.14

• Newcomer docs: new getting-started guide for remote Streamable HTTP clients — how to start biomcp serve-http, use /mcp, and check /health and /readyz
• Runnable demo: demo/streamable_http_client.py — a self-contained PEP 723 script using the official Python MCP SDK, runnable with uv run --script
• Docs home: remote HTTP server section added to docs/index.md so the transport is visible from first visit
• README: updated with remote HTTP quick-start and demo reference
• serve-sse migration guidance: kept visible for users still on the legacy SSE path

See the CHANGELOG for full details.

v0.8.13

See CHANGELOG.md for full details.

v0.8.12

What's Changed

• Make all search subcommands accept bare positional arguments by @imaurer in #160
• Update CHANGELOG and docs for releases 0.8.5–0.8.11 by @imaurer in #161
• Harden CLI for agent use: multi-token args, --until alias, variant error guidance by @imaurer in #162
• Replace SKILL.md with experiment-validated version, remove use-case files by @imaurer in #163
• Improve CLI usability: variant fallback, NCT validation, bare-entity shortcuts, and better timeouts by @imaurer in #164
• Auto-discover skill install target using cross-tool standard by @imaurer in #165
• Refresh skills reference material and add schema drift validation by @imaurer in #166
• Add local cBioPortal study adapters with study query CLI by @imaurer in #167
• Add cohort filtering, survival aggregates, and group comparison for cBioPortal studies by @imaurer in #168
• Add multi-omics cross-table join for study filtering by @imaurer in #169
• Add Fisher's exact p-value to gene co-occurrence analysis by @imaurer in #170

Full Changelog: v0.8.11...v0.8.12

v0.8.11

Changes

• Evidence URLs and citations on entity outputs (#156)
• Gene enrichment — GTEx expression data, DGIdb druggability, ClinGen gene-disease validity (#157)
• Streamlined CI — PR checks are now Rust-only (~3 min); release workflow consolidates validation, binary builds, PyPI wheels, and docs deployment into a single pipeline (#159)

v0.8.10

What's Changed

• 200: search-all output polish, link safety, and infrastructure hygiene by @imaurer in #144
• Delete docs/changelog.md by @imaurer in #145
• 204: trial search improvements and PyPI trusted publisher by @imaurer in #146

Full Changelog: v0.8.9...v0.8.10

v0.8.9

What's Changed

• 198-biomcp-search-all: add cross-entity search all command by @imaurer in #141
• 198: bump version to 0.8.9 by @imaurer in #142

Full Changelog: v0.8.8...v0.8.9

v0.8.8

Output Cleanup & Help Discoverability

Output Deduplication

• Population data shown exactly once (was rendered 3x with inline summary + pipe table + AF line)
• Conservation, AlphaGenome, interactions converted from pipe tables to key-value pairs
• Adverse event reactions/outcomes converted from single-column tables to bullet lists
• All entity metadata headers standardized to plain Key: Value (no bold)

Actionable Footers

• Sections: replaced with More: / All: showing copy-pasteable biomcp get commands
• Related: replaced with See also: listing full biomcp commands, one per line
• All 11 entity templates updated consistently

Help Discoverability

• biomcp list starts with quickstart block showing example commands
• Skills tip added to list output
• biomcp list skill now works (aliases to skill list)
• list enrich and list batch are first-class help pages
• --biomarker documented in list trial, --since documented in list article
• list phenotype and list gwas expanded with workflow examples
• health shows affected features when APIs fail

Quality

• 349 Rust tests, 0 clippy warnings
• 117 VV executable documentation contracts passing

v0.8.7

What's Changed

• 193-biomcp-help-fixes: improve help discoverability and completeness by @imaurer in #138

Full Changelog: v0.8.6...v0.8.7

v0.8.6

What's Changed

• 191: fix trial filter accuracy — age post-filter, exclusion detection, pathway source by @imaurer in #137

Full Changelog: v0.8.5...v0.8.6

v0.8.5

What's Changed

• fix: install.sh resolves latest to release with assets by @imaurer in #134
• 189: Enforce pagination and validation contracts by @imaurer in #135
• 190: Harden input safety, SSRF prevention, and pagination contracts by @imaurer in #136

Full Changelog: v0.8.4...v0.8.5