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Add controls for mid-depth of the fluid shell
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‎examples/dynamo_benchmark/dynamobench_case_2/README‎

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Here is the input files for the dynamo benchmark case 1.
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This example consists of the following files and directories
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control_MHD: control file for simulation
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control_snapshot: control file for data analysis
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control_resolution: control file for spatial resolution
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README: This file
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clean.sh: Shell script for cleaning data
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control_MHD: Control file for simulation
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sph_lm31r48c_4_ic: Directory for spherical harmonics index table
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rst_4: Directory for restart files
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field: Directory for field data files
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controls: Directory for visualization controls
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sph_lm63r72c_ic_6: Directory for spherical shell resolution control
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monitor: Directory for time series data
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rst_6: Directory for restart files
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field: Directory for visualization data
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sections: Directory for cross sections data
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isosurfaces: Directory for isosurface data
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The simulation procedure is the following
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radial_point.dat: Radial grid point data
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reference_fields.dat: Radial data for reference temperature
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time_total.dat: Elapsed time data
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1: Run index and initial field generation program as
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[dynamobench_case_1]$ [CALYPSO_DIR]/bin/sph_initial_field
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2. Run simulation program
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The command to invoke the simulation is
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[dynamobench_case_1]$ mpirun -np 4 [CALYPSO_DIR]/bin/sph_mhd
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3. To continue the simulation change rst_ctl in control_MHD from
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To continue the simulation change rst_ctl in control_MHD from
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rst_ctl dynamo_benchmark_2
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to
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rst_ctl start_from_rst_file
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And, start simulation again by 2.
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4. To check the required results for dynamo benchmark, run
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[dynamobench_case_1]$ mpirun -np 4 [CALYPSO_DIR]/bin/sph_dynamobench

‎examples/dynamo_benchmark/dynamobench_case_2/control_MHD‎

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array cross_section_ctl
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file cross_section_ctl 'controls/control_psf_CMB'
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file cross_section_ctl 'controls/control_psf_ICB'
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file cross_section_ctl 'controls/control_psf_mid_depth'
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file cross_section_ctl 'controls/control_psf_eq'
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file cross_section_ctl 'controls/control_psf_z0.3'
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file cross_section_ctl 'controls/control_psf_s0.55'

‎examples/dynamo_benchmark/dynamobench_case_2/controls/README‎

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! Please see Christensen et.al. (2001) for the model description
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!-----------------------------------------------------------------------
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!
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Field data for visualization are stored in this directory.
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Control data for visualization are stored in this directory.
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The following files are ready:
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README: This file
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control_psf_CMB: Section at the outer boudary of the shell r = 20/13
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control_psf_ICB: Section at the inner boudary of the shell r = 7/13
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control_psf_mid_depth: Section at the mid-depth of the fluid shell r = 27/26
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control_psf_eq: Section at the equatorial plane z = 0.0
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control_psf_z0.3: Section at the plane at z = 0.3
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control_psf_s0.55: Cylindrical section at s = 0.55
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control_psf_zm: Meridional section for zonal mean
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control_iso_temp: Temperature isosurface for T = 0.7
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control_snapshot: Control file for data transform from restart data

‎examples/dynamo_benchmark/dynamobench_case_2/controls/control_psf_mid_depth‎

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!
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!
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! example of control for Kemo's surface rendering
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!
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begin cross_section_ctl
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section_file_prefix 'sections/mid_depth'
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section_file_format 'VTK_gz'
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!
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begin surface_define
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section_method sphere
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!
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array center_position
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center_position x 0.0
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center_position y 0.0
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center_position z 0.0
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end array center_position
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!
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radius 1.0384
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!
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array section_area_ctl
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section_area_ctl outer_core
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end array section_area_ctl
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end surface_define
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!
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begin output_field_define
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array output_field
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output_field magnetic_field spherical_vector
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output_field velocity spherical_vector
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output_field temperature scalar
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end array output_field
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end output_field_define
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end cross_section_ctl

‎examples/dynamo_benchmark/dynamobench_case_2/field/README‎

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!-----------------------------------------------------------------------
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!
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Field data for visualization are stored in this directory.
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The following files are stored:
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README: This file
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out.[field step #].vtk.gz: Field data for visualization in compressed VTK data format

‎examples/dynamo_benchmark/dynamobench_case_2/isosurfaces/README‎

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! Please see Christensen et.al. (2001) for the model description
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!-----------------------------------------------------------------------
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!
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Field data for visualization are stored in this directory.
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Isosurface data for visualization are stored in this directory.
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The following files are stored:
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README: This file
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temp0_7.[isosurface step #].vtk.gz: Isosurface data for visualization in compressed VTK data format

‎examples/dynamo_benchmark/dynamobench_case_2/monitor/README‎

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!-----------------------------------------------------------------------
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!
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Spherical harmonics monitor data files are stored in this directory.
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The following files are stored:
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README: This file
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monitor/Nusselt.dat.gz Time series of the Nusselt number
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monitor/dynamobench.dat: Time series of the Dynamo benchmark results
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monitor/gauss_coefs.dat.gz: Gauss coefficients at r = 2.91
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monitor/picked_mode_l1_m0c.dat.gz: Y_1^0 component of spherical harmonics coefficients
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monitor/picked_mode_l2_m0c.dat.gz: Y_2^0 component of spherical harmonics coefficients
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monitor/sph_pwr_layer_l.dat.gz: Power spectrum as a function of spherical harmonics degree at specific radial layers
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monitor/sph_pwr_layer_lm.dat.gz: Power spectrum as a function of meridional wave number at specific radial layers
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monitor/sph_pwr_layer_m.dat.gz: Power spectrum as a function of spherical harmonics order at specific radial layers
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monitor/sph_pwr_layer_m0.dat.gz: Axisymmetric power spectrum as a function of spherical harmonics degree at specific radial layers
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monitor/sph_pwr_layer_s.dat.gz: Mean square at specific radial layers
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monitor/sph_ave_volume.dat.gz: Average fields over the fluid shell
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monitor/sph_pwr_volume_l.dat.gz: Power spectrum as a function of spherical harmonics degree average over the fluid shell
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monitor/sph_pwr_volume_lm.dat.gz: Power spectrum as a function of meridional wave number average over the fluid shell
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monitor/sph_pwr_volume_m.dat.gz: Power spectrum as a function of spherical harmonics order average over the fluid shell
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monitor/sph_pwr_volume_m0.dat.gz: Axisymmetric power spectrum as a function of spherical harmonics degree average over the fluid shell
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monitor/sph_pwr_volume_s.dat.gz: Mean square average over the fluid shell

‎examples/dynamo_benchmark/dynamobench_case_2/rst_6/README‎

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!-----------------------------------------------------------------------
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!
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Restart data files are stored in this directory.
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The following files are stored:
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README: This file
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rst.[restart step #].fsb.gz: Restart data file

‎examples/dynamo_benchmark/dynamobench_case_2/sections/README‎

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! Please see Christensen et.al. (2001) for the model description
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!-----------------------------------------------------------------------
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!
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Sectioning data are stored in this directory.
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Sectioning data files for visualization are stored in this directory.
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The following files are stored:
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README: This file
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CMB.[section step #].vtk.gz: Section data at outer boundary of the shell in compressed VTK format
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ICB.[section step #].vtk.gz: Section data at inner boundary of the shell in compressed VTK format
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mid_depth.[section step #].vtk.gz: Section data at the mid-depth of the shell in compressed VTK format
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equator.[section step #].vtk: Section data at the equatorial plane in VTK format
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section_z03.0.sgd.gz: Grid data at the z = 0.3 cross section in compressed binary format
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section_z03.[section step #].sdt.gz: Field data at the z = 0.3 cross section in compressed binary format
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cylinder_s055.0.sgd: Grid data at the s = 0.55 cylinder section in compressed binary format
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cylinder_s055.[section step #].sdt: Field data at the s = 0.55 cylinder section in compressed binary format

‎examples/dynamo_benchmark/dynamobench_case_2/sph_lm63r72c_ic_6/README‎

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! Please see Christensen et.al. (2001) for the model description
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!-----------------------------------------------------------------------
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!
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Field data for visualization are stored in this directory.
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Resolution control data file is stored in this directory.
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The following files are ready:
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README: This file
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control_resolution: Control file for spatial resolution

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