Installation errors: errors after $ make

[Chensons]

justin@Justins-Macbook CitcomS-3.3.1 % make
/Volumes/JustinsSN770Disk/Applications/Xcode.app/Contents/Developer/usr/bin/make all-recursive
Making all in Py2C
make[2]: Nothing to be done for all'. Making all in etc make[2]: Nothing to be done for all'.
Making all in examples
make[2]: Nothing to be done for all'. Making all in tests make[2]: Nothing to be done for all'.
Making all in visual
Making all in OpenDXMacro
make[3]: Nothing to be done for all'. make[3]: Nothing to be done for all-am'.
Making all in lib
mpicc -DHAVE_CONFIG_H -I. -I.. -DUSE_GZDIR -g -O2 -MT libCitcomS_a-BC_util.o -MD -MP -MF .deps/libCitcomS_a-BC_util.Tpo -c -o libCitcomS_a-BC_util.o test -f 'BC_util.c' || echo './'BC_util.c
BC_util.c:268:48: error: implicitly declaring library function 'pow' with type 'double (double, double)' [-Werror,-Wimplicit-function-declaration]
k = noz + (int)((float)E->mesh.toplayerbc / pow(2.,(float)(E->mesh.gridmax-lv)));
^
BC_util.c:268:48: note: include the header <math.h> or explicitly provide a declaration for 'pow'
1 error generated.
make[2]: *** [libCitcomS_a-BC_util.o] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2

[thwbecker]

Try adding

#include <math.h>

to global_defs.h in lib/

[Chensons]

Try adding

#include <math.h>

to global_defs.h in lib/

================ Configuration Summary ================
-e CC: mpicc
-e CFLAGS: -g -O2
-e CPPFLAGS: -DUSE_GZDIR
-e LDFLAGS:
-e LIBS: -lz
-e with-hdf5: no
-e with-ggrd: no

justin@Justins-Macbook CitcomS-3.3.1 2 % make
/Volumes/JustinsSN770Disk/Applications/Xcode.app/Contents/Developer/usr/bin/make all-recursive
Making all in Py2C
mpicxx -DHAVE_CONFIG_H -I. -I.. -DUSE_GZDIR -g -O2 -MT Py2CMain.o -MD -MP -MF .deps/Py2CMain.Tpo -c -o Py2CMain.o Py2CMain.cpp
mv -f .deps/Py2CMain.Tpo .deps/Py2CMain.Po
mpicxx -DHAVE_CONFIG_H -I. -I.. -DUSE_GZDIR -g -O2 -MT Py2C.o -MD -MP -MF .deps/Py2C.Tpo -c -o Py2C.o Py2C.cpp
mv -f .deps/Py2C.Tpo .deps/Py2C.Po
/bin/sh ../libtool --tag=CXX --mode=link mpicxx -g -O2 -o Py2C Py2CMain.o Py2C.o -lz
libtool: link: mpicxx -g -O2 -o Py2C Py2CMain.o Py2C.o -Wl,-bind_at_load -lz
Making all in etc
make[2]: Nothing to be done for all'. Making all in examples make[2]: Nothing to be done for all'.
Making all in tests
make[2]: Nothing to be done for `all'.
Making all in visual
Making all in OpenDXMacro
sed -e s:[@]dxmacrodir[@]:/Users/justin/Downloads/CitcomS-3.3.1 2/visual/OpenDXMacro:g CitcomSFullImport.net.in > CitcomSFullImport.net || (rm -f CitcomSFullImport.net && exit 1)
sed: 1: "s:[@]dxmacrodir[@]:/Use ...": unescaped newline inside substitute pattern
make[3]: *** [CitcomSFullImport.net] Error 1
make[2]: *** [all-recursive] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2

Thank you. It worked the previous errors, but new may be coming? And why my “-e with-hdf5: no”?

[thwbecker]

it looks to me that you were able to compile the main code - I have no idea about the OpenDX tools, and have never used them.

The flags about no dhf5 just mean you won't have those libraries and I/O

[Chensons]

it looks to me that you were able to compile the main code - I have no idea about the OpenDX tools, and have never used them.

The flags about no dhf5 just mean you won't have those libraries and I/O

Thank you very much！Yes, I can compile the main code, but ‘make’ failed so that I could not runmpi the examples. Mac OS 12 may be unfriendly to the CitcomS installation and running at present. I have installed a Ubuntu virtual machine to try it again. Thanks!

[Chensons]

Actually, Ubuntu is the same as the Mac OS. Maybe there are new bug related to the new version CitcomS-3.3.1….

[thwbecker]

Like said. It looks like you should have the binaries in bin/ - did you check that? You don’t need the opendx stuff

[Chensons]

Like said. It looks like you should have the binaries in bin/ - did you check that? You don’t need the opendx stuff

I checked it，but there are no Citcoms.

[thwbecker]

Sorry, not sure then. Maybe there’s issues on Mac OS.

[Chensons]

Sorry, not sure then. Maybe there’s issues on Mac OS.

Possibly. Thank you Dr. thwbecker very much.

[zbc1508]

justin@Justins-Macbook CitcomS-3.3.1 % make /Volumes/JustinsSN770Disk/Applications/Xcode.app/Contents/Developer/usr/bin/make all-recursive Making all in Py2C make[2]: Nothing to be done for all'. Making all in etc make[2]: Nothing to be done for all'. Making all in examples make[2]: Nothing to be done for all'. Making all in tests make[2]: Nothing to be done for all'. Making all in visual Making all in OpenDXMacro make[3]: Nothing to be done for all'. make[3]: Nothing to be done for all-am'. Making all in lib mpicc -DHAVE_CONFIG_H -I. -I.. -DUSE_GZDIR -g -O2 -MT libCitcomS_a-BC_util.o -MD -MP -MF .deps/libCitcomS_a-BC_util.Tpo -c -o libCitcomS_a-BC_util.o test -f 'BC_util.c' || echo './'BC_util.c BC_util.c:268:48: error: implicitly declaring library function 'pow' with type 'double (double, double)' [-Werror,-Wimplicit-function-declaration] k = noz + (int)((float)E->mesh.toplayerbc / pow(2.,(float)(E->mesh.gridmax-lv))); ^ BC_util.c:268:48: note: include the header <math.h> or explicitly provide a declaration for 'pow' 1 error generated. make[2]: *** [libCitcomS_a-BC_util.o] Error 1 make[1]: *** [all-recursive] Error 1 make: *** [all] Error 2

I have the same errors as yours. My system is Mac OS 13.14. So I am wondering what is the better system for using Citcoms?

[tan2]

Hi Justin, All active developers of CitcomS use it on Linux. It is better to find a linux machine and install CitcomS on it.

…

On Thu, Jul 6, 2023 at 9:25 PM zbc1508 ***@***.***> wrote: ***@***.*** CitcomS-3.3.1 % make /Volumes/JustinsSN770Disk/Applications/Xcode.app/Contents/Developer/usr/bin/make all-recursive Making all in Py2C make[2]: Nothing to be done for all'. Making all in etc make[2]: Nothing to be done for all'. Making all in examples make[2]: Nothing to be done for all'. Making all in tests make[2]: Nothing to be done for all'. Making all in visual Making all in OpenDXMacro make[3]: Nothing to be done for all'. make[3]: Nothing to be done for all-am'. Making all in lib mpicc -DHAVE_CONFIG_H -I. -I.. -DUSE_GZDIR -g -O2 -MT libCitcomS_a-BC_util.o -MD -MP -MF .deps/libCitcomS_a-BC_util.Tpo -c -o libCitcomS_a-BC_util.o test -f 'BC_util.c' || echo './'BC_util.c BC_util.c:268:48: error: implicitly declaring library function 'pow' with type 'double (double, double)' [-Werror,-Wimplicit-function-declaration] k = noz + (int)((float)E->mesh.toplayerbc / pow(2.,(float)(E->mesh.gridmax-lv))); ^ BC_util.c:268:48: note: include the header <math.h> or explicitly provide a declaration for 'pow' 1 error generated. make[2]: *** [libCitcomS_a-BC_util.o] Error 1 make[1]: *** [all-recursive] Error 1 make: *** [all] Error 2 I have the same errors as yours. My system is Mac OS 13.14. So I am wondering what is the better system for using Citcoms? — Reply to this email directly, view it on GitHub <#9 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AABWQQWAN53Y5SBOLXUVAG3XO24F7ANCNFSM6AAAAAAQBSJEBY> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[thwbecker]

It also looks like somehow math.h is not including, even though BC_util.c sources global_defs.h which has #include <math.h> in it Maybe just add #include <math.h> to the routine in question for good measure, and set LDFLAGS = -lm to make sure libraries are loaded. Thorsten Becker - UT Austin

…

On Fri, Jul 7, 2023 at 7:50 AM Eh Tan ***@***.***> wrote: Hi Justin, All active developers of CitcomS use it on Linux. It is better to find a linux machine and install CitcomS on it. On Thu, Jul 6, 2023 at 9:25 PM zbc1508 ***@***.***> wrote: > ***@***.*** CitcomS-3.3.1 % make > /Volumes/JustinsSN770Disk/Applications/Xcode.app/Contents/Developer/usr/bin/make > all-recursive Making all in Py2C make[2]: Nothing to be done for all'. > Making all in etc make[2]: Nothing to be done for all'. Making all in > examples make[2]: Nothing to be done for all'. Making all in tests > make[2]: Nothing to be done for all'. Making all in visual Making all in > OpenDXMacro make[3]: Nothing to be done for all'. make[3]: Nothing to be > done for all-am'. Making all in lib mpicc -DHAVE_CONFIG_H -I. -I.. > -DUSE_GZDIR -g -O2 -MT libCitcomS_a-BC_util.o -MD -MP -MF > .deps/libCitcomS_a-BC_util.Tpo -c -o libCitcomS_a-BC_util.o test -f > 'BC_util.c' || echo './'BC_util.c BC_util.c:268:48: error: implicitly > declaring library function 'pow' with type 'double (double, double)' > [-Werror,-Wimplicit-function-declaration] k = noz + > (int)((float)E->mesh.toplayerbc / pow(2.,(float)(E->mesh.gridmax-lv))); ^ > BC_util.c:268:48: note: include the header <math.h> or explicitly provide a > declaration for 'pow' 1 error generated. make[2]: *** > [libCitcomS_a-BC_util.o] Error 1 make[1]: *** [all-recursive] Error 1 make: > *** [all] Error 2 > > I have the same errors as yours. My system is Mac OS 13.14. So I am > wondering what is the better system for using Citcoms? > > — > Reply to this email directly, view it on GitHub > <#9 (comment)>, > or unsubscribe > < https://github.com/notifications/unsubscribe-auth/AABWQQWAN53Y5SBOLXUVAG3XO24F7ANCNFSM6AAAAAAQBSJEBY> > . > You are receiving this because you are subscribed to this thread.Message > ID: ***@***.***> > — Reply to this email directly, view it on GitHub <#9 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ABLL4YZV2HFEDTVLY6GF42DXO6PSBANCNFSM6AAAAAAQBSJEBY> . You are receiving this because you commented.Message ID: ***@***.***>