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Merge pull request #1 from naliboff/new_release_v3
Update ConMan to version 3.0.0
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‎.zenodo.json‎

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{
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"creators": [
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{
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"name": "Scott King",
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"affiliation": "Virginia Tech University",
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"orcid": "0000-0002-9564-5164"
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},
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{
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"name": "Arthur Raefsky"
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},
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{
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"name": "Brad H. Hager",
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"affiliation": "MIT",
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"orcid": "0000-0002-5643-1374"
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}
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]
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}

‎CITATION‎

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King, S.D., A. Raefsky, and B.H. Hager (1990), ConMan: Vectorizing a finite
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element code for incompressible two-dimensional convection in the Earth’s
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mantle, Phys. Earth Planet. Int., 59, 195-208.
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King S. D., C. Lee, P. E. van Keken, W. Leng, S. Zhong, E. Tan, E., M. Gurnis,
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N. Tosi, and M. C. Kameyama (2010). A community benchmark for 2D Cartesian
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compressible convection in the Earth’s mantle, Geophys. J. Int., 180, 73-87,
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2010. doi:10.1111/j.1365-246X.2009.04413.x

‎Cookbook1/Make_table.sh‎

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# Make a LaTeX table for Benchmarks
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#########################################
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# User Adjustable Parameters #
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#########################################
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FILE=blankenbach
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LATEX='latex'
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DVIPS='dvips'
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export FILE LATEX DVIPS GHOST
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#########################################
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# End User Adjustable Parameters #
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#########################################
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TEXFILE=$FILE.tex
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DVIFILE=$FILE.dvi
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PSFILE=$FILE.ps
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export TEXFILE DVIFILE PSFILE
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/bin/rm -f $TEXFILE
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echo '\documentclass[11pt]{article}' >> $TEXFILE
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echo '\begin{document}' >> $TEXFILE
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#########################################
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# Rayleigh Number 10,000 Blankenbach #
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#########################################
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echo '\begin{table}' >> $TEXFILE
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echo '\centering' >> $TEXFILE
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echo '\begin{tabular} {| r c c c c c c r |} \hline ' >> $TEXFILE
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echo '\multicolumn{1}{| c }{Grid} &' >> $TEXFILE
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echo '\multicolumn{1}{ c }{V$_{rms}$} &' >> $TEXFILE
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echo '\multicolumn{1}{ c }{Nusselt No.} &' >> $TEXFILE
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echo '\multicolumn{1}{ c }{Topo$_L$} &' >> $TEXFILE
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echo '\multicolumn{1}{ c }{Topo$_R$} &' >> $TEXFILE
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echo '\multicolumn{1}{ c }{Geoid$_L$} &' >> $TEXFILE
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echo '\multicolumn{1}{ c }{Geoid$_R$} & ' >> $TEXFILE
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echo '\multicolumn{1}{ c |}{Time (sec)} \\ ' >> $TEXFILE
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echo '\hline ' >> $TEXFILE
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vrms=`tail -1 tser.bm1a50 | awk '{printf "%5.3f", $3}'`
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nu=`tail -1 tser.bm1a50 | awk '{printf "%5.3f", $2}'`
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topol=`awk 'NR==54 {printf "%7.3f", $3}' geoid.bm1a50`
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geoidl=`awk 'NR==54 {printf "%5.3f", $5}' geoid.bm1a50`
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topor=`awk 'NR==104 {printf "%7.3f", $3}' geoid.bm1a50`
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geoidr=`awk 'NR==104 {printf "%5.3f", $5}' geoid.bm1a50`
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time=`awk '$1=="total" {print $2}' out.bm1a50`
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export vrms nu topol geoidl topor geoidr time
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echo ' 50 &' $vrms '&' $nu '&' $topol '&' $topor '&' $geoidl '&' $geoidr '&' $time '\\' >> $TEXFILE
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vrms=`tail -1 tser.bm1a100 | awk '{printf "%5.3f", $3}'`
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nu=`tail -1 tser.bm1a100 | awk '{printf "%5.3f", $2}'`
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topol=`awk 'NR==104 {printf "%7.3f", $3}' geoid.bm1a100`
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geoidl=`awk 'NR==104 {printf "%5.3f", $5}' geoid.bm1a100`
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topor=`awk 'NR==204 {printf "%7.3f", $3}' geoid.bm1a100`
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geoidr=`awk 'NR==204 {printf "%5.3f", $5}' geoid.bm1a100`
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time=`awk '$1=="total" {print $2}' out.bm1a100`
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export vrms nu topol geoidl topor geoidr time
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echo '100 &' $vrms '&' $nu '&' $topol '&' $topor '&' $geoidl '&' $geoidr '&' $time '\\' >> $TEXFILE
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vrms=`tail -1 tser.bm1a200 | awk '{printf "%5.3f", $3}'`
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nu=`tail -1 tser.bm1a200 | awk '{printf "%5.3f", $2}'`
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topol=`awk 'NR==204 {printf "%7.3f", $3}' geoid.bm1a200`
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geoidl=`awk 'NR==204 {printf "%5.3f", $5}' geoid.bm1a200`
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topor=`awk 'NR==404 {printf "%7.3f", $3}' geoid.bm1a200`
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geoidr=`awk 'NR==404 {printf "%5.3f", $5}' geoid.bm1a200`
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time=`awk '$1=="total" {print $2}' out.bm1a200`
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export vrms nu topol geoidl topor geoidr time
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echo '200 &' $vrms '&' $nu '&' $topol '&' $topor '&' $geoidl '&' $geoidr '&' $time '\\' >> $TEXFILE
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echo '\hline ' >> $TEXFILE
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echo '\dag C$_{ext}$ & 42.865 & 4.884 & 2254.021 & -2903.221 & 54.822 & -62.622 & \null \\' >> $TEXFILE
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echo '\hline ' >> $TEXFILE
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echo '\multicolumn{8}{|l|}{\dag Christensen$^{\prime}$s extrapolated values.} \\' >> $TEXFILE
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echo '\hline ' >> $TEXFILE
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echo '\end{tabular}' >> $TEXFILE
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echo '\caption{Blankenbach (1989) Benchmark 1a: Steady State, 2D, constant viscosity convection in a 1 by 1 box with Rayleigh number $10^4$ using ConMan} ' >> $TEXFILE
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echo '\end{table}' >> $TEXFILE
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#########################################
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# Rayleigh Number 100,000 Blankenbach #
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#########################################
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echo '\begin{table}' >> $TEXFILE
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echo '\centering' >> $TEXFILE
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echo '\begin{tabular} {| r c c c c c c r |} \hline ' >> $TEXFILE
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echo '\multicolumn{1}{| c }{Grid} &' >> $TEXFILE
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echo '\multicolumn{1}{ c }{V$_{rms}$} &' >> $TEXFILE
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echo '\multicolumn{1}{ c }{Nusselt No.} &' >> $TEXFILE
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echo '\multicolumn{1}{ c }{Topo$_L$} &' >> $TEXFILE
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echo '\multicolumn{1}{ c }{Topo$_R$} &' >> $TEXFILE
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echo '\multicolumn{1}{ c }{Geoid$_L$} &' >> $TEXFILE
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echo '\multicolumn{1}{ c }{Geoid$_R$} & ' >> $TEXFILE
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echo '\multicolumn{1}{ c |}{Time (sec)} \\ ' >> $TEXFILE
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echo '\hline ' >> $TEXFILE
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vrms=`tail -1 tser.bm1b50 | awk '{printf "%5.3f", $3}'`
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nu=`tail -1 tser.bm1b50 | awk '{printf "%5.3f", $2}'`
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topol=`awk 'NR==54 {printf "%7.3f", $3}' geoid.bm1b50`
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geoidl=`awk 'NR==54 {printf "%5.3f", $5}' geoid.bm1b50`
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topor=`awk 'NR==104 {printf "%7.3f", $3}' geoid.bm1b50`
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geoidr=`awk 'NR==104 {printf "%5.3f", $5}' geoid.bm1b50`
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time=`awk '$1=="total" {print $2}' out.bm1b50`
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export vrms nu topol geoidl topor geoidr time
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echo '50 &' $vrms '&' $nu '&' $topol '&' $topor '&' $geoidl '&' $geoidr '&' $time '\\' >> $TEXFILE
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vrms=`tail -1 tser.bm1b100 | awk '{printf "%5.3f", $3}'`
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nu=`tail -1 tser.bm1b100 | awk '{printf "%5.3f", $2}'`
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topol=`awk 'NR==104 {printf "%7.3f", $3}' geoid.bm1b100`
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geoidl=`awk 'NR==104 {printf "%5.3f", $5}' geoid.bm1b100`
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topor=`awk 'NR==204 {printf "%7.3f", $3}' geoid.bm1b100`
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geoidr=`awk 'NR==204 {printf "%5.3f", $5}' geoid.bm1b100`
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time=`awk '$1=="total" {print $2}' out.bm1b100`
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export vrms nu topol geoidl topor geoidr time
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echo '100 &' $vrms '&' $nu '&' $topol '&' $topor '&' $geoidl '&' $geoidr '&' $time '\\' >> $TEXFILE
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vrms=`tail -1 tser.bm1b200 | awk '{printf "%5.3f", $3}'`
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nu=`tail -1 tser.bm1b200 | awk '{printf "%5.3f", $2}'`
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topol=`awk 'NR==204 {printf "%7.3f", $3}' geoid.bm1b200`
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geoidl=`awk 'NR==204 {printf "%5.3f", $5}' geoid.bm1b200`
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topor=`awk 'NR==404 {printf "%7.3f", $3}' geoid.bm1b200`
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geoidr=`awk 'NR==404 {printf "%5.3f", $5}' geoid.bm1b200`
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time=`awk '$1=="total" {print $2}' out.bm1b200`
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export vrms nu topol geoidl topor geoidr time
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echo '200 &' $vrms '&' $nu '&' $topol '&' $topor '&' $geoidl '&' $geoidr '&' $time '\\' >> $TEXFILE
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echo '\hline ' >> $TEXFILE
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echo '\dag C$_{ext}$ & 193.214 & 10.534 & 1460.986 & -2004.205 & 27.703 & -32.016 & \null \\' >> $TEXFILE
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echo '\hline ' >> $TEXFILE
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echo '\multicolumn{8}{|l|}{\dag Christensen$^{\prime}$s extrapolated values.} \\' >> $TEXFILE
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echo '\hline ' >> $TEXFILE
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echo '\end{tabular}' >> $TEXFILE
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echo '\caption{Blankenbach (1989) Benchmark 1b: Steady State, 2D, constant viscosity convection in a 1 by 1 box with Rayleigh number $10^5$ using ConMan} ' >> $TEXFILE
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echo '\end{table}' >> $TEXFILE
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#########################################
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# Rayleigh Number 1,000,000 Blankenbach #
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#########################################
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echo '\begin{table}' >> $TEXFILE
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echo '\centering' >> $TEXFILE
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echo '\begin{tabular} {| r c c c c c c r |} \hline ' >> $TEXFILE
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echo '\multicolumn{1}{| c }{Grid} &' >> $TEXFILE
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echo '\multicolumn{1}{ c }{V$_{rms}$} &' >> $TEXFILE
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echo '\multicolumn{1}{ c }{Nusselt No.} &' >> $TEXFILE
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echo '\multicolumn{1}{ c }{Topo$_L$} &' >> $TEXFILE
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echo '\multicolumn{1}{ c }{Topo$_R$} &' >> $TEXFILE
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echo '\multicolumn{1}{ c }{Geoid$_L$} &' >> $TEXFILE
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echo '\multicolumn{1}{ c }{Geoid$_R$} &' >> $TEXFILE
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echo '\multicolumn{1}{ c |}{Time (sec)} \\ ' >> $TEXFILE
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echo '\hline ' >> $TEXFILE
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vrms=`tail -1 tser.bm1c50 | awk '{printf "%5.3f", $3}'`
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nu=`tail -1 tser.bm1c50 | awk '{printf "%5.3f", $2}'`
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topol=`awk 'NR==54 {printf "%7.3f", $3}' geoid.bm1c50`
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geoidl=`awk 'NR==54 {printf "%5.3f", $5}' geoid.bm1c50`
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topor=`awk 'NR==104 {printf "%7.3f", $3}' geoid.bm1c50`
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geoidr=`awk 'NR==104 {printf "%5.3f", $5}' geoid.bm1c50`
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time=`awk '$1=="total" {print $2}' out.bm1c50`
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export vrms nu topol geoidl topor geoidr time
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echo '50 &' $vrms '&' $nu '&' $topol '&' $topor '&' $geoidl '&' $geoidr '&' $time '\\' >> $TEXFILE
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vrms=`tail -1 tser.bm1c100 | awk '{printf "%5.3f", $3}'`
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nu=`tail -1 tser.bm1c100 | awk '{printf "%5.3f", $2}'`
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topol=`awk 'NR==104 {printf "%7.3f", $3}' geoid.bm1c100`
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geoidl=`awk 'NR==104 {printf "%5.3f", $5}' geoid.bm1c100`
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topor=`awk 'NR==204 {printf "%7.3f", $3}' geoid.bm1c100`
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geoidr=`awk 'NR==204 {printf "%5.3f", $5}' geoid.bm1c100`
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time=`awk '$1=="total" {print $2}' out.bm1c100`
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export vrms nu topol geoidl topor geoidr time
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echo '100 &' $vrms '&' $nu '&' $topol '&' $topor '&' $geoidl '&' $geoidr '&' $time '\\' >> $TEXFILE
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vrms=`tail -1 tser.bm1c200 | awk '{printf "%5.3f", $3}'`
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nu=`tail -1 tser.bm1c200 | awk '{printf "%5.3f", $2}'`
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topol=`awk 'NR==204 {printf "%7.3f", $3}' geoid.bm1c200`
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geoidl=`awk 'NR==204 {printf "%5.3f", $5}' geoid.bm1c200`
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topor=`awk 'NR==404 {printf "%7.3f", $3}' geoid.bm1c200`
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geoidr=`awk 'NR==404 {printf "%5.3f", $5}' geoid.bm1c200`
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time=`awk '$1=="total" {print $2}' out.bm1c200`
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export vrms nu topol geoidl topor geoidr time
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echo '200 &' $vrms '&' $nu '&' $topol '&' $topor '&' $geoidl '&' $geoidr '&' $time '\\' >> $TEXFILE
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echo '\hline ' >> $TEXFILE
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echo '\dag C$_{ext}$ & 833.989 & 21.997 & 931.962 & -1283.813 & 13.452 & -15.034 & \null \\' >> $TEXFILE
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echo '\hline ' >> $TEXFILE
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echo '\multicolumn{8}{|l|}{\dag Christensen$^{\prime}$s extrapolated values.} \\' >> $TEXFILE
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echo '\hline ' >> $TEXFILE
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echo '\end{tabular}' >> $TEXFILE
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echo '\caption{Blankenbach (1989) Benchmark 1c: Steady State, 2D, constant viscosity convection in a 1 by 1 box with Rayleigh number $10^6$ using ConMan.} ' >> $TEXFILE
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echo '\end{table}' >> $TEXFILE
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#########################################
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# Rayleigh Number 10,000 Blankenbach TD #
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#########################################
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echo '\begin{table}' >> $TEXFILE
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echo '\centering' >> $TEXFILE
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echo '\begin{tabular} {| r c c c c c c r |} \hline ' >> $TEXFILE
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echo '\multicolumn{1}{| c }{Grid} &' >> $TEXFILE
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echo '\multicolumn{1}{ c }{V$_{rms}$} &' >> $TEXFILE
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echo '\multicolumn{1}{ c }{Nusselt No.} &' >> $TEXFILE
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echo '\multicolumn{1}{ c }{Topo$_L$} &' >> $TEXFILE
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echo '\multicolumn{1}{ c }{Topo$_R$} &' >> $TEXFILE
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echo '\multicolumn{1}{ c }{Geoid$_L$} &' >> $TEXFILE
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echo '\multicolumn{1}{ c }{Geoid$_R$} &' >> $TEXFILE
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echo '\multicolumn{1}{ c |}{Time (sec)} \\ ' >> $TEXFILE
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echo '\hline ' >> $TEXFILE
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vrms=`tail -1 tser.bm2a50 | awk '{printf "%5.3f", $3}'`
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nu=`tail -1 tser.bm2a50 | awk '{printf "%5.3f", $2}'`
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topol=`awk 'NR==54 {printf "%7.3f", $3}' geoid.bm2a50`
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geoidl=`awk 'NR==54 {printf "%5.3f", $5}' geoid.bm2a50`
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topor=`awk 'NR==104 {printf "%7.3f", $3}' geoid.bm2a50`
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geoidr=`awk 'NR==104 {printf "%5.3f", $5}' geoid.bm2a50`
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time=`awk '$1=="total" {print $2}' out.bm2a50`
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export vrms nu topol geoidl topor geoidr time
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echo '50 &' $vrms '&' $nu '&' $topol '&' $topor '&' $geoidl '&' $geoidr '&' $time '\\' >> $TEXFILE
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vrms=`tail -1 tser.bm2a100 | awk '{printf "%5.3f", $3}'`
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nu=`tail -1 tser.bm2a100 | awk '{printf "%5.3f", $2}'`
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topol=`awk 'NR==104 {printf "%7.3f", $3}' geoid.bm2a100`
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geoidl=`awk 'NR==104 {printf "%5.3f", $5}' geoid.bm2a100`
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topor=`awk 'NR==204 {printf "%7.3f", $3}' geoid.bm2a100`
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geoidr=`awk 'NR==204 {printf "%5.3f", $5}' geoid.bm2a100`
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time=`awk '$1=="total" {print $2}' out.bm2a100`
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export vrms nu topol geoidl topor geoidr time
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echo '100 &' $vrms '&' $nu '&' $topol '&' $topor '&' $geoidl '&' $geoidr '&' $time '\\' >> $TEXFILE
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vrms=`tail -1 tser.bm2a200 | awk '{printf "%5.3f", $3}'`
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nu=`tail -1 tser.bm2a200 | awk '{printf "%5.3f", $2}'`
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topol=`awk 'NR==204 {printf "%7.3f", $3}' geoid.bm2a200`
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geoidl=`awk 'NR==204 {printf "%5.3f", $5}' geoid.bm2a200`
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topor=`awk 'NR==404 {printf "%7.3f", $3}' geoid.bm2a200`
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geoidr=`awk 'NR==404 {printf "%5.3f", $5}' geoid.bm2a200`
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time=`awk '$1=="total" {print $2}' out.bm2a200`
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export vrms nu topol geoidl topor geoidr time
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echo '200 &' $vrms '&' $nu '&' $topol '&' $topor '&' $geoidl '&' $geoidr '&' $time '\\' >> $TEXFILE
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# vrms=`tail -1 tser.bm2a400 | awk '{printf "%5.3f", $3}'`
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# nu=`tail -1 tser.bm2a400 | awk '{printf "%5.3f", $2}'`
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# topol=`awk 'NR==404 {printf "%7.3f", $3}' geoid.bm2a400`
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# geoidl=`awk 'NR==404 {printf "%5.3f", $5}' geoid.bm2a400`
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# topor=`awk 'NR==804 {printf "%7.3f", $3}' geoid.bm2a400`
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# geoidr=`awk 'NR==804 {printf "%5.3f", $5}' geoid.bm2a400`
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# time=`awk '$1=="total" {print $2}' out.bm2a400`
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# export vrms nu topol geoidl topor geoidr time
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#echo '400 &' $vrms '&' $nu '&' $topol '&' $topor '&' $geoidl '&' $geoidr '&' $time '\\' >> $TEXFILE
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# vrms=`tail -1 tser.bm2a600 | awk '{printf "%5.3f", $3}'`
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# nu=`tail -1 tser.bm2a600 | awk '{printf "%5.3f", $2}'`
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# topol=`awk 'NR==604 {printf "%7.3f", $3}' geoid.bm2a600`
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# geoidl=`awk 'NR==604 {printf "%5.3f", $5}' geoid.bm2a600`
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# topor=`awk 'NR==1204 {printf "%7.3f", $3}' geoid.bm2a600`
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# geoidr=`awk 'NR==1204 {printf "%5.3f", $5}' geoid.bm2a600`
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# time=`awk '$1=="total" {print $2}' out.bm2a600`
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# export vrms nu topol geoidl topor geoidr time
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#echo '600 &' $vrms '&' $nu '&' $topol '&' $topor '&' $geoidl '&' $geoidr '&' $time '\\' >> $TEXFILE
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#echo '\hline ' >> $TEXFILE
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echo '\dag C$_{ext}$ & 480.433 & 10.066 & 1010.925 & -4098.073 & 17.343 & -54.598 & \null \\' >> $TEXFILE
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echo '\hline ' >> $TEXFILE
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echo '\multicolumn{8}{|l|}{\dag Christensen$^{\prime}$s extrapolated values.} \\' >> $TEXFILE
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echo '\hline ' >> $TEXFILE
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echo '\end{tabular}' >> $TEXFILE
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echo '\caption{Blankenbach (1989) Benchmark 2a: Steady State, 2D, temperature-dependent viscosity convection (b=6.907755279) in a 1 by 1 box with Rayleigh number $10^4$ using ConMan.} ' >> $TEXFILE
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echo '\end{table}' >> $TEXFILE
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echo '\end{document}' >> $TEXFILE
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#########################################
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# Run LaTeX and make Postscript file #
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#########################################
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$LATEX $TEXFILE
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$DVIPS $DVIFILE -o $PSFILE
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open $PSFILE

‎Cookbook1/RUN_Cookbook1.sh‎

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#/bin/bash -f
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# Cookbook 1 run script
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#
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echo 'please be patient, running 50x50 Blankenbach 1989 constant viscosity calculations'
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echo 'estimated completion time: 10 seconds'
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../conman < run.bm1a50
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../conman < run.bm1b50
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../conman < run.bm1c50
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#
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echo 'please be patient, running 100x100 Blankenbach 1989 constant viscosity calculations'
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echo 'estimated completion time: 30 seconds'
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../conman < run.bm1a100
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../conman < run.bm1b100
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../conman < run.bm1c100
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#
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echo 'please be patient, running 200x200 Blankenbach 1989 constant viscosity calculations'
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echo 'estimated completion time: 5 minutes'
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../conman < run.bm1a200
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../conman < run.bm1b200
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../conman < run.bm1c200
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#
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echo 'please be really patient, running 200x200 Blankenbach 1989 temperature-dependent calculations'
23+
echo 'estimated completion time: 50 minutes'
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../conman < run.bm2a50
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../conman < run.bm2a100
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../conman < run.bm2a200
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# these take a long, long time (11 hours and 120 hours)
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#../conman < run.bm2a400
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#../conman < run.bm2a600

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