Merge pull request #486 from geodynamics/baagaard/update-examples-3dsubduction

Update examples/subduction-3d (steps 1-4) for v3.0

Author: baagaard-usgs

.gitignore

@@ -25,12 +25,11 @@ autom4te.cache
 /build
 /dist
 output/
-examples/3d/subduction/mesh/geometry_surfs.jou
-examples/3d/subduction/mesh/*.exo
-examples/3d/subduction/mesh/*.sat
-examples/3d/subduction/spatialdb/fault_slabtop_slowslip.spatialdb
-examples/3d/subduction/spatialdb/fault_slabtop_slowslip.timedb
-examples/3d/subduction/spatialdb/mat_initial_stress_grav-*.spatialdb
+examples/subduction-3d/scratch/*.spatialdb
+examples/subduction-3d/scratch/*.sat
+examples/subduction-3d/scratch/*.txt
+examples/subduction-3d/scratch/*.jou
+examples/subduction-3d/input/*.exo
 /docs/_build/
 /doc-latex/userguide/userguide.pdf
 /doc-latex/userguide/userguide.aux

README.md

@@ -8,7 +8,7 @@
 ## Description
 
 PyLith is an open-source finite-element code for dynamic and
-quasistatic simulations of crustal deformation, primarily earthquakes
+quasi-static simulations of crustal deformation, primarily earthquakes
 and volcanoes.
 
 * Main page: [https://geodynamics.org/resources/pylith](https://geodynamics.org/resources/pylith)

docs/Makefile.am

@@ -392,6 +392,34 @@ dist_noinst_DATA = \
     user/examples/subduction-2d/figs/step03-diagram.svg \
     user/examples/subduction-2d/figs/step03-solution.jpg \
     user/examples/subduction-3d/index.md \
+    user/examples/subduction-3d/common-information.md \
+    user/examples/subduction-3d/exercises.md \
+    user/examples/subduction-3d/meshing-cubit.md \
+    user/examples/subduction-3d/step01-axialdisp.md \
+    user/examples/subduction-3d/step02-coseismic.md \
+    user/examples/subduction-3d/step03-interseismic.md \
+    user/examples/subduction-3d/step04-eqcycle.md \
+    user/examples/subduction-3d/figs/cascadia.png \
+    user/examples/subduction-3d/figs/conceptualmodel.png \
+    user/examples/subduction-3d/figs/cubit-geometry-patch.png \
+    user/examples/subduction-3d/figs/cubit-geometry.png \
+    user/examples/subduction-3d/figs/cubit-mesh.jpg \
+    user/examples/subduction-3d/figs/diagrams.tex \
+    user/examples/subduction-3d/figs/generate.sh \
+    user/examples/subduction-3d/figs/step01-diagram.pdf \
+    user/examples/subduction-3d/figs/step01-diagram.svg \
+    user/examples/subduction-3d/figs/step01-solution.jpg \
+    user/examples/subduction-3d/figs/step02-diagram.pdf \
+    user/examples/subduction-3d/figs/step02-diagram.svg \
+    user/examples/subduction-3d/figs/step02-solution.jpg \
+    user/examples/subduction-3d/figs/step03-diagram.pdf \
+    user/examples/subduction-3d/figs/step03-diagram.svg \
+    user/examples/subduction-3d/figs/step03-solution.jpg \
+    user/examples/subduction-3d/figs/step04-diagram.pdf \
+    user/examples/subduction-3d/figs/step04-diagram.svg \
+    user/examples/subduction-3d/figs/step04-solution.jpg \
+    user/examples/subduction-3d/figs/step06-diagram.pdf \
+    user/examples/subduction-3d/figs/step06-diagram.svg \
     user/examples/examples-other.md \
     user/examples/index.md \
     user/examples/paraview-python.md \

docs/intro/development-plan.md

@@ -2,7 +2,7 @@
 
 Future implementation of features is guided by several target applications, including
 
-* Earthquake cycle modeling with quasistatic simulation of interseismic deformation and dynamic simulation of coseismic deformation.
+* Earthquake cycle modeling with quasi-static simulation of interseismic deformation and dynamic simulation of coseismic deformation.
 * Inversion of geodetic data for slow slip events, fault creep, and long-term fault slip rates.
 * Quasistatic and dynamic modeling of fluids and faulting.
 

docs/user/examples/box-2d/step01_axialdisp-synopsis.md

@@ -9,6 +9,6 @@
 * spatialdata.spatialdb.UniformDB
 * pylith.meshio.DataWriterHDF5
 * Static simulation
-* ILU preconditioner
+* LU preconditioner
 * pylith.bc.DirichletTimeDependent
 * spatialdata.spatialdb.ZeroDB

docs/user/examples/box-2d/step02_sheardisp-synopsis.md

@@ -9,6 +9,6 @@
 * spatialdata.spatialdb.UniformDB
 * pylith.meshio.DataWriterHDF5
 * Static simulation
-* ILU preconditioner
+* LU preconditioner
 * pylith.bc.DirichletTimeDependent
 * spatialdata.spatialdb.SimpleDB

docs/user/examples/box-2d/step03_sheardisptract-synopsis.md

@@ -9,7 +9,7 @@
 * spatialdata.spatialdb.UniformDB
 * pylith.meshio.DataWriterHDF5
 * Static simulation
-* ILU preconditioner
+* LU preconditioner
 * pylith.bc.DirichletTimeDependent
 * pylith.bc.NeumannTimeDependent
 * spatialdata.spatialdb.SimpleDB

docs/user/examples/box-2d/step04_sheardispic-synopsis.md

@@ -9,7 +9,7 @@
 * spatialdata.spatialdb.UniformDB
 * pylith.meshio.DataWriterHDF5
 * Static simulation
-* ILU preconditioner
+* LU preconditioner
 * pylith.problems.InitialConditionDomain
 * pylith.bc.DirichletTimeDependent
 * spatialdata.spatialdb.SimpleDB

docs/user/examples/box-2d/step05_sheardisptractrate-synopsis.md

@@ -8,9 +8,9 @@
 * pylith.materials.IsotropicLinearElasticity
 * spatialdata.spatialdb.UniformDB
 * pylith.meshio.DataWriterHDF5
-* Quasistatic simulation
+* Quasi-static simulation
 * backward Euler time stepping
-* ILU preconditioner
+* LU preconditioner
 * pylith.bc.DirichletTimeDependent
 * pylith.bc.NeumannTimeDependent
 * spatialdata.spatialdb.SimpleDB

docs/user/examples/box-3d/step01_axialdisp-synopsis.md

@@ -10,6 +10,6 @@
 * pylith.meshio.OutputSolnBoundary
 * pylith.meshio.DataWriterHDF5
 * Static simulation
-* ILU preconditioner
+* LU preconditioner
 * pylith.bc.DirichletTimeDependent
 * spatialdata.spatialdb.ZeroDB