Problems in Importing Some Modules When Using the Binder

[LeeGeophysics]

Dear Geoscixyz Developers,

Hello, I am Jaewook Lee, a teaching assistant at UT Dallas.
I'd like to use your geosci-labs materials for educational purposes in my Applied Geophysics course.
I tried to run some Notebooks via Binder, but I failed to do it with the following error:

---

ImportError Traceback (most recent call last)
/tmp/ipykernel_157/141298955.py in
1 import numpy as np
----> 2 from geoscilabs.mag import Mag, Simulator
3 from SimPEG.potential_fields import magnetics as mag
4 from SimPEG import utils, data
5 from discretize import TensorMesh

/srv/conda/envs/notebook/lib/python3.8/site-packages/geoscilabs/mag/init.py in
----> 1 from . import Mag
2 from . import Simulator
3 from . import MagDipole
4 from . import MagDipoleApp

/srv/conda/envs/notebook/lib/python3.8/site-packages/geoscilabs/mag/Mag.py in
3 import re
4 import numpy as np
----> 5 from SimPEG import utils, data
6 from SimPEG.potential_fields import magnetics as mag
7

/srv/conda/envs/notebook/lib/python3.8/site-packages/SimPEG/init.py in
6 from discretize import tests
7
----> 8 from .data import Data, SyntheticData
9 from . import data_misfit
10 from . import directives

/srv/conda/envs/notebook/lib/python3.8/site-packages/SimPEG/data.py in
4 import warnings
5
----> 6 from .survey import BaseSurvey
7 from . import survey
8 from .utils import mkvc

/srv/conda/envs/notebook/lib/python3.8/site-packages/SimPEG/survey.py in
4 import properties
5 import warnings
----> 6 from .utils.code_utils import deprecate_property, deprecate_class, deprecate_method
7
8 from .utils import mkvc, Counter

/srv/conda/envs/notebook/lib/python3.8/site-packages/SimPEG/utils/init.py in
57 from .plot_utils import plot2Ddata, plotLayer, plot_1d_layer_model
58 from .io_utils import download
---> 59 from .pgi_utils import (
60 make_SimplePGI_regularization,
61 make_PGI_regularization,

/srv/conda/envs/notebook/lib/python3.8/site-packages/SimPEG/utils/pgi_utils.py in
20 _check_shape,
21 )
---> 22 from sklearn.mixture._base import _check_X, check_random_state, ConvergenceWarning
23 import warnings
24 from .mat_utils import mkvc

ImportError: cannot import name '_check_X' from 'sklearn.mixture._base' (/srv/conda/envs/notebook/lib/python3.8/site-packages/sklearn/mixture/_base.py)

Attached is the screenshot showing the error message on my web browser.
Thank you in advance.

Best regards,
Jaewook Lee

[thast]

Hi @LeeGeophysics,
Thanks for bringing this to our attention. We are aware of the issue (an incompatibility with the new release of scikit-learn). A fix has been put for review and should be available very soon!

[thast]

If you need it urgently, then you can do a manual fix by downgrading to scikit-learn 0.24.2 within the binder notebook. Before running anything else, at the beginning of the notebook, run a cell with: ! pip install scikit-learn==0.24.2

[LeeGeophysics]

Thank you so much for your prompt reply! @thast
I am not good at using Python and Binder, but I tried to make a cell and downgrade the module you mentioned.
However, I found the same error message as this screenshot. Could you give a few comments? :-)

[thast]

@LeeGeophysics : you would need to restart the notebook. and run the cell in order as you have them now (with ! pip ... first, just in case). See picture below:

[thast]

Let us know if this solves your issue (it does on my side).

[LeeGeophysics]

Thank you so much @thast , I can use the other Notebooks with this solution. :-)