cbioformatter/pyproject.toml at main · getwilds/cbioformatter · GitHub

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[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"

[project]
name = "cbioformatter"
version = "0.3.0"
description = "Streamline conversion of clinical and genomic data into cBioPortal-compatible formats"
readme = "README.md"
license = "MIT"
requires-python = ">=3.10"
authors = [
    { name = "Taylor Firman", email = "tfirman@fredhutch.org" },
]
keywords = [
    "cbioportal",
    "clinical-data",
    "genomics",
    "bioinformatics",
    "data-formatting",
]
classifiers = [
    "Development Status :: 3 - Alpha",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: MIT License",
    "Operating System :: OS Independent",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Programming Language :: Python :: 3.13",
    "Programming Language :: Python :: 3.14",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
]
dependencies = [
    "pandas>=1.5.0",
    "requests>=2.28.0",
    "pyyaml>=6.0",
    "jinja2>=3.1.0",
]

[project.optional-dependencies]
dev = [
    "pytest>=7.0.0",
    "pytest-cov>=4.0.0",
    "ruff>=0.1.0",
    "ipython>=8.0.0",
]

[project.urls]
Homepage = "https://github.com/getwilds/cbioformatter"
Repository = "https://github.com/getwilds/cbioformatter"
Issues = "https://github.com/getwilds/cbioformatter/issues"

[tool.hatch.build.targets.sdist]
include = [
    "/src",
]

[tool.hatch.build.targets.wheel]
packages = ["src/cbioformatter"]

[tool.pytest.ini_options]
testpaths = ["tests"]
pythonpath = ["src"]
markers = [
    "slow: tests that perform a real validator clone (deselect with -m 'not slow')",
]

[tool.ruff]
line-length = 88
target-version = "py310"

[tool.ruff.lint]
select = ["E", "F", "I", "UP"]