Run nf-test #26
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| name: Run nf-test | |
| on: | |
| pull_request: | |
| paths-ignore: | |
| - "docs/**" | |
| release: | |
| types: [published] | |
| workflow_dispatch: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| NFT_VER: "0.9.3" | |
| NFT_WORKDIR: "~" | |
| NXF_ANSI_LOG: false | |
| NXF_SINGULARITY_CACHEDIR: ${{ github.workspace }}/.singularity | |
| NXF_SINGULARITY_LIBRARYDIR: ${{ github.workspace }}/.singularity | |
| jobs: | |
| nf-test-changes: | |
| name: nf-test-changes | |
| runs-on: ubuntu-latest | |
| outputs: | |
| shard: ${{ steps.set-shards.outputs.shard }} | |
| total_shards: ${{ steps.set-shards.outputs.total_shards }} | |
| steps: | |
| - name: Clean Workspace | |
| run: rm -rf ./* || true | |
| - uses: actions/checkout@v5 | |
| with: | |
| fetch-depth: 0 | |
| - name: get number of shards | |
| id: set-shards | |
| uses: ./.github/actions/get-shards | |
| with: | |
| max_shards: 7 | |
| nf-test: | |
| name: "${{ matrix.profile }} | ${{ matrix.shard }}/${{ needs.nf-test-changes.outputs.total_shards }}" | |
| needs: [nf-test-changes] | |
| if: ${{ needs.nf-test-changes.outputs.total_shards != '0' }} | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| shard: ${{ fromJson(needs.nf-test-changes.outputs.shard) }} | |
| profile: [docker, singularity] | |
| NXF_VER: ["25.04.0"] | |
| env: | |
| NXF_VERSION: ${{ matrix.NXF_VER }} | |
| steps: | |
| - uses: actions/checkout@v5 | |
| with: | |
| fetch-depth: 0 | |
| - name: Run nf-test | |
| uses: ./.github/actions/nf-test | |
| with: | |
| profile: ${{ matrix.profile }} | |
| shard: ${{ matrix.shard }} | |
| total_shards: ${{ needs.nf-test-changes.outputs.total_shards }} | |
| confirm-pass: | |
| needs: [nf-test] | |
| if: always() | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: All tests ok | |
| if: ${{ !contains(needs.*.result, 'failure') && !contains(needs.*.result, 'cancelled') }} | |
| run: exit 0 | |
| - name: Tests failed | |
| if: ${{ contains(needs.*.result, 'failure') || contains(needs.*.result, 'cancelled') }} | |
| run: exit 1 |